Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   LLUC047_RS12250 Genome accession   NZ_CP068658
Coordinates   2341614..2341802 (-) Length   62 a.a.
NCBI ID   WP_014573336.1    Uniprot ID   -
Organism   Lactococcus cremoris strain UC047     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 2336473..2340933 2341614..2341802 flank 681


Gene organization within MGE regions


Location: 2336473..2341802
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLUC047_RS12215 (LLUC047_11925) - 2337540..2338349 (-) 810 WP_011677177.1 metal ABC transporter permease -
  LLUC047_RS12220 (LLUC047_11930) - 2338342..2339079 (-) 738 WP_011677178.1 metal ABC transporter ATP-binding protein -
  LLUC047_RS12225 (LLUC047_11935) - 2339258..2340100 (-) 843 WP_021216263.1 metal ABC transporter solute-binding protein, Zn/Mn family -
  LLUC047_RS12230 (LLUC047_11940) - 2340097..2340534 (-) 438 WP_011677180.1 zinc-dependent MarR family transcriptional regulator -
  LLUC047_RS12235 (LLUC047_11945) comGG 2340614..2340913 (-) 300 WP_011677181.1 competence type IV pilus minor pilin ComGG Machinery gene
  LLUC047_RS12240 (LLUC047_11950) comGF 2340937..2341362 (-) 426 WP_021216262.1 competence type IV pilus minor pilin ComGF Machinery gene
  LLUC047_RS12245 (LLUC047_11955) comGE 2341346..2341582 (-) 237 WP_014573335.1 competence type IV pilus minor pilin ComGE Machinery gene
  LLUC047_RS12250 (LLUC047_14310) comGD 2341614..2341802 (-) 189 WP_014573336.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 62 a.a.        Molecular weight: 7336.65 Da        Isoelectric Point: 8.3463

>NTDB_id=530278 LLUC047_RS12250 WP_014573336.1 2341614..2341802(-) (comGD) [Lactococcus cremoris strain UC047]
MIYENKEIDIPKEVEMAEFLIIFDEKGGNSSLQKIKVYLPYEKKTILYQMEMGSGKYKKKIN

Nucleotide


Download         Length: 189 bp        

>NTDB_id=530278 LLUC047_RS12250 WP_014573336.1 2341614..2341802(-) (comGD) [Lactococcus cremoris strain UC047]
TTGATTTATGAAAACAAAGAGATAGATATTCCCAAAGAGGTTGAAATGGCAGAATTTTTGATTATATTTGATGAGAAAGG
GGGGAACTCAAGTTTACAGAAAATCAAAGTTTATTTACCTTATGAGAAGAAAACAATTTTATATCAAATGGAGATGGGGA
GTGGAAAATATAAAAAGAAAATCAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Lactococcus lactis subsp. cremoris KW2

93.548

100

0.935
  comYD Streptococcus mutans UA140

43.396

85.484

0.371
  comYD Streptococcus mutans UA159

43.396

85.484

0.371