Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   LLUC047_RS12240 Genome accession   NZ_CP068658
Coordinates   2340937..2341362 (-) Length   141 a.a.
NCBI ID   WP_021216262.1    Uniprot ID   A0A896TCW7
Organism   Lactococcus cremoris strain UC047     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 2336473..2340933 2340937..2341362 flank 4


Gene organization within MGE regions


Location: 2336473..2341362
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLUC047_RS12215 (LLUC047_11925) - 2337540..2338349 (-) 810 WP_011677177.1 metal ABC transporter permease -
  LLUC047_RS12220 (LLUC047_11930) - 2338342..2339079 (-) 738 WP_011677178.1 metal ABC transporter ATP-binding protein -
  LLUC047_RS12225 (LLUC047_11935) - 2339258..2340100 (-) 843 WP_021216263.1 metal ABC transporter solute-binding protein, Zn/Mn family -
  LLUC047_RS12230 (LLUC047_11940) - 2340097..2340534 (-) 438 WP_011677180.1 zinc-dependent MarR family transcriptional regulator -
  LLUC047_RS12235 (LLUC047_11945) comGG 2340614..2340913 (-) 300 WP_011677181.1 competence type IV pilus minor pilin ComGG Machinery gene
  LLUC047_RS12240 (LLUC047_11950) comGF 2340937..2341362 (-) 426 WP_021216262.1 competence type IV pilus minor pilin ComGF Machinery gene

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 16282.84 Da        Isoelectric Point: 7.7759

>NTDB_id=530276 LLUC047_RS12240 WP_021216262.1 2340937..2341362(-) (comGF) [Lactococcus cremoris strain UC047]
MKLKIRAFTLLECLVALLAISGSVLVISGLTRMIEEQMKISQNDSRKDWQIFCEQMRSELSGAKLDNVNQNFLYVTKDKK
LRFELVGDDFRKSDDKGQGYQPMLYDLKGAKIQAEENLIKITIDFDNGGERVFIYRFTDTK

Nucleotide


Download         Length: 426 bp        

>NTDB_id=530276 LLUC047_RS12240 WP_021216262.1 2340937..2341362(-) (comGF) [Lactococcus cremoris strain UC047]
TTGAAGCTCAAAATTAGGGCATTTACTTTACTTGAATGTCTCGTAGCACTTTTGGCAATTTCTGGTTCAGTGCTAGTCAT
CTCAGGGCTGACTAGAATGATTGAAGAACAGATGAAAATAAGCCAGAATGATAGTAGGAAAGATTGGCAAATATTTTGTG
AACAAATGCGTTCAGAACTCTCCGGAGCAAAATTAGACAATGTGAATCAAAATTTTTTGTATGTGACCAAAGATAAGAAG
TTACGGTTCGAATTAGTAGGGGATGATTTTCGTAAAAGTGATGATAAAGGGCAAGGATACCAACCGATGCTTTATGATTT
AAAAGGAGCAAAAATTCAGGCAGAAGAAAATTTGATAAAAATAACAATTGATTTTGATAATGGAGGTGAGCGAGTATTTA
TTTATCGATTTACTGATACAAAGTAA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(38-130)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Lactococcus lactis subsp. cremoris KW2

99.291

100

0.993
  comYF Streptococcus mutans UA140

43.262

100

0.433
  comYF Streptococcus mutans UA159

42.553

100

0.426
  comGF/cglF Streptococcus mitis NCTC 12261

38.462

100

0.39
  comGF/cglF Streptococcus mitis SK321

38.571

99.291

0.383
  comGF/cglF Streptococcus pneumoniae Rx1

37.143

99.291

0.369
  comGF/cglF Streptococcus pneumoniae D39

37.143

99.291

0.369
  comGF/cglF Streptococcus pneumoniae R6

37.143

99.291

0.369
  comGF/cglF Streptococcus pneumoniae TIGR4

37.143

99.291

0.369