Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   JHS79_RS15745 Genome accession   NZ_CP068641
Coordinates   3163062..3163640 (-) Length   192 a.a.
NCBI ID   WP_075111203.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain VP157     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3158062..3168640
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHS79_RS15720 (JHS79_15570) aroB 3158352..3159452 (-) 1101 WP_005480443.1 3-dehydroquinate synthase -
  JHS79_RS15725 (JHS79_15575) aroK 3159484..3160002 (-) 519 WP_005381319.1 shikimate kinase AroK -
  JHS79_RS15730 (JHS79_15580) pilQ 3160191..3161939 (-) 1749 WP_025556542.1 type IV pilus secretin PilQ Machinery gene
  JHS79_RS15735 (JHS79_15585) pilP 3161971..3162486 (-) 516 WP_025525190.1 pilus assembly protein PilP Machinery gene
  JHS79_RS15740 (JHS79_15590) pilO 3162476..3163069 (-) 594 WP_005480482.1 type 4a pilus biogenesis protein PilO Machinery gene
  JHS79_RS15745 (JHS79_15595) pilN 3163062..3163640 (-) 579 WP_075111203.1 PilN domain-containing protein Machinery gene
  JHS79_RS15750 (JHS79_15600) pilM 3163624..3164640 (-) 1017 WP_075111204.1 type IV pilus biogenesis protein PilM Machinery gene
  JHS79_RS15755 (JHS79_15605) - 3164783..3167353 (+) 2571 WP_140126307.1 penicillin-binding protein 1A -
  JHS79_RS15760 (JHS79_15610) oxyR 3167409..3168317 (-) 909 WP_005465160.1 DNA-binding transcriptional regulator OxyR -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22503.02 Da        Isoelectric Point: 6.6554

>NTDB_id=530180 JHS79_RS15745 WP_075111203.1 3163062..3163640(-) (pilN) [Vibrio parahaemolyticus strain VP157]
MLYRINLLPWRENQREEHRRRFVGLVVLGVMVAFGIQWGVGKYYEYQQDLQQERLDYLTTYISDLDKRIEAMKIAELEHS
KILERLKVVEALQNGRNKTTDFMNLMPAVIPEGVYVDKIKMNDLEIEISGISDSTPRLATMLDNMERSAKLLDVEMHSIV
HGKARFGKEFQTFKVSFMFNMVEEQKEGKQHG

Nucleotide


Download         Length: 579 bp        

>NTDB_id=530180 JHS79_RS15745 WP_075111203.1 3163062..3163640(-) (pilN) [Vibrio parahaemolyticus strain VP157]
GTGCTGTATCGCATTAACTTATTGCCTTGGCGCGAAAATCAAAGGGAAGAGCATCGTCGTCGATTTGTCGGTTTGGTGGT
ATTGGGCGTCATGGTGGCGTTTGGGATTCAGTGGGGCGTTGGCAAATATTATGAGTACCAACAAGATCTTCAACAAGAGC
GACTCGACTATCTAACAACGTACATTTCCGATCTAGATAAGCGGATAGAAGCGATGAAGATCGCGGAGCTTGAACACAGC
AAAATCTTGGAACGCTTGAAAGTTGTGGAAGCGTTGCAAAATGGTCGGAATAAAACCACTGATTTTATGAACCTCATGCC
TGCTGTTATTCCAGAAGGCGTGTATGTCGACAAGATCAAAATGAACGATCTAGAAATTGAAATCTCAGGTATTTCAGACA
GTACACCTCGGCTAGCAACCATGCTCGATAACATGGAGCGTTCTGCCAAGCTACTGGACGTTGAAATGCACTCTATCGTG
CACGGAAAAGCCCGTTTCGGTAAAGAGTTTCAGACCTTTAAAGTGTCCTTCATGTTTAACATGGTAGAAGAGCAGAAAGA
GGGAAAACAACATGGTTAA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(103-176)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Vibrio campbellii strain DS40M4

82.812

100

0.828
  pilN Vibrio cholerae strain A1552

63.842

92.188

0.589