Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   JHS79_RS15750 Genome accession   NZ_CP068641
Coordinates   3163624..3164640 (-) Length   338 a.a.
NCBI ID   WP_075111204.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain VP157     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3158624..3169640
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHS79_RS15725 (JHS79_15575) aroK 3159484..3160002 (-) 519 WP_005381319.1 shikimate kinase AroK -
  JHS79_RS15730 (JHS79_15580) pilQ 3160191..3161939 (-) 1749 WP_025556542.1 type IV pilus secretin PilQ Machinery gene
  JHS79_RS15735 (JHS79_15585) pilP 3161971..3162486 (-) 516 WP_025525190.1 pilus assembly protein PilP Machinery gene
  JHS79_RS15740 (JHS79_15590) pilO 3162476..3163069 (-) 594 WP_005480482.1 type 4a pilus biogenesis protein PilO Machinery gene
  JHS79_RS15745 (JHS79_15595) pilN 3163062..3163640 (-) 579 WP_075111203.1 PilN domain-containing protein Machinery gene
  JHS79_RS15750 (JHS79_15600) pilM 3163624..3164640 (-) 1017 WP_075111204.1 type IV pilus biogenesis protein PilM Machinery gene
  JHS79_RS15755 (JHS79_15605) - 3164783..3167353 (+) 2571 WP_140126307.1 penicillin-binding protein 1A -
  JHS79_RS15760 (JHS79_15610) oxyR 3167409..3168317 (-) 909 WP_005465160.1 DNA-binding transcriptional regulator OxyR -
  JHS79_RS15765 (JHS79_15615) - 3168488..3169216 (+) 729 WP_015297397.1 redoxin family protein -

Sequence

Protein


Download         Length: 338 a.a.        Molecular weight: 37817.37 Da        Isoelectric Point: 7.0223

>NTDB_id=530181 JHS79_RS15750 WP_075111204.1 3163624..3164640(-) (pilM) [Vibrio parahaemolyticus strain VP157]
MDKLIVTGIDIGHNSLKAVVLKPIGDQYALLGYKEILLKEGIVAENNTINHQEIVKTLKQMKKDLPFGAKRVAISVPDNS
VISKKLQIEQSLDESEIEFAVVQAFSHQSPFPVEELSLDFVRLRAEEGMRGTDSYQVFATRKDVVERRVEALQQSGLKPV
LVDVHSQSLGHIWKLAAERFPEKNKYCLLDIGSLASSFTMFTEQGELFHKEFACGTRISMGTSQEDLLSDDAQAKTEQFN
RQVVERVKRQMQLYTSINGSQNIKGIWLSGEGASTPMLAEELSHQLALECELLNPLGLFEMKVSKRKRRAADWQHFSTAA
GLAVRGIHWLGGVRAVSH

Nucleotide


Download         Length: 1017 bp        

>NTDB_id=530181 JHS79_RS15750 WP_075111204.1 3163624..3164640(-) (pilM) [Vibrio parahaemolyticus strain VP157]
ATGGATAAGCTAATCGTTACCGGCATAGATATTGGCCATAACAGCCTCAAAGCCGTAGTACTTAAACCCATTGGCGATCA
ATACGCCTTACTGGGTTACAAAGAAATATTACTTAAGGAAGGTATTGTCGCTGAAAATAACACTATAAATCATCAAGAAA
TTGTAAAGACCCTAAAGCAGATGAAAAAAGATCTGCCTTTTGGGGCCAAGCGAGTGGCAATTTCTGTTCCAGACAACTCA
GTTATTAGCAAGAAACTGCAAATCGAACAAAGCCTTGATGAGAGCGAAATCGAGTTTGCAGTGGTACAAGCTTTTTCTCA
TCAATCTCCTTTTCCTGTGGAAGAACTGAGTTTGGATTTTGTACGCCTTCGTGCTGAAGAAGGGATGCGTGGAACGGACA
GTTATCAAGTATTCGCTACGCGCAAAGATGTGGTTGAAAGGCGAGTTGAGGCGTTACAACAGTCTGGTTTAAAGCCTGTG
TTGGTTGACGTGCACTCTCAAAGCCTAGGTCATATCTGGAAGCTTGCCGCAGAGCGTTTTCCTGAAAAAAACAAATACTG
TTTGTTAGACATCGGCTCGCTAGCGAGTTCATTCACCATGTTTACCGAGCAAGGCGAACTGTTTCATAAGGAGTTTGCGT
GCGGTACTCGTATTTCAATGGGGACGTCACAAGAAGACTTACTTTCTGATGATGCTCAAGCCAAAACGGAACAGTTCAAT
CGTCAAGTGGTTGAGCGCGTAAAACGTCAAATGCAGCTCTATACCTCGATCAACGGTTCGCAAAACATCAAAGGCATTTG
GTTATCGGGCGAGGGGGCATCGACGCCAATGTTGGCAGAAGAGCTGTCGCATCAGTTGGCATTGGAGTGTGAGTTGTTAA
ACCCACTCGGACTGTTTGAAATGAAAGTGTCGAAACGCAAGCGCCGAGCGGCCGATTGGCAACATTTTTCGACGGCTGCA
GGGCTGGCGGTGCGTGGCATTCATTGGTTAGGAGGTGTGCGTGCTGTATCGCATTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(8-326)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Vibrio campbellii strain DS40M4

84.911

100

0.849
  pilM Vibrio cholerae strain A1552

48.071

99.704

0.479