Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   JHS79_RS15515 Genome accession   NZ_CP068641
Coordinates   3110262..3110906 (+) Length   214 a.a.
NCBI ID   WP_005480993.1    Uniprot ID   Q87LA2
Organism   Vibrio parahaemolyticus strain VP157     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3105262..3115906
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHS79_RS15500 (JHS79_15340) - 3105746..3107191 (-) 1446 WP_005481017.1 MSHA biogenesis protein MshI -
  JHS79_RS15505 (JHS79_15345) csrD 3107203..3109212 (-) 2010 WP_011106082.1 RNase E specificity factor CsrD -
  JHS79_RS15510 (JHS79_15350) ssb 3109453..3109983 (-) 531 WP_005466625.1 single-stranded DNA-binding protein Machinery gene
  JHS79_RS15515 (JHS79_15355) qstR 3110262..3110906 (+) 645 WP_005480993.1 LuxR C-terminal-related transcriptional regulator Regulator
  JHS79_RS15520 (JHS79_15360) galU 3111164..3112036 (+) 873 WP_005466627.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  JHS79_RS15525 (JHS79_15365) uvrA 3112174..3114996 (+) 2823 WP_025522377.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24386.20 Da        Isoelectric Point: 8.7760

>NTDB_id=530176 JHS79_RS15515 WP_005480993.1 3110262..3110906(+) (qstR) [Vibrio parahaemolyticus strain VP157]
MRKSAYARKLFLISMEDDAAQKVASLEKYIDMSIPVISTDALMEAKPEHRNKILLIDFSEHKSLVQSIKNLPLVWKNFET
VVFNVPKRLTTDELLAFGQLKGLFYSEDSLEQVGEGLKGIVNGQNWLPRNVTSQLLHYYRNVINTHTAPATVDLTIRELQ
VLRCLQAGASNSQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=530176 JHS79_RS15515 WP_005480993.1 3110262..3110906(+) (qstR) [Vibrio parahaemolyticus strain VP157]
GTGAGAAAGTCGGCTTACGCAAGAAAGCTATTTCTGATTAGTATGGAAGACGATGCTGCGCAGAAAGTCGCATCATTAGA
AAAGTACATCGATATGAGCATTCCTGTAATCTCAACCGATGCCCTAATGGAAGCGAAACCCGAACATCGAAATAAAATTC
TGCTCATTGACTTCAGTGAACATAAATCACTCGTTCAATCGATTAAAAACCTGCCATTGGTTTGGAAGAACTTTGAGACG
GTCGTGTTCAACGTTCCAAAACGCCTCACTACGGATGAACTGCTCGCCTTCGGTCAATTAAAAGGCTTGTTTTACAGCGA
AGATTCTTTAGAACAAGTAGGCGAAGGACTGAAAGGCATTGTCAACGGGCAAAACTGGCTACCACGCAACGTAACCAGCC
AACTGCTGCACTACTATCGAAATGTGATAAATACTCACACCGCGCCAGCAACCGTCGATCTCACCATTCGCGAACTGCAA
GTGCTGCGTTGTCTGCAAGCTGGAGCATCGAATAGCCAGATGGCAGAAGAACTGTTTGTTAGCGAATTTACGATCAAGTC
GCACCTGTATCAGATCTTTAAAAAGCTCTCAGTGAAAAACCGAGTTCAAGCCATTGCTTGGGCCGATCAAAACTTGATGT
CTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87LA2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio parahaemolyticus RIMD 2210633

100

100

1
  qstR Vibrio campbellii strain DS40M4

89.252

100

0.893
  qstR Vibrio cholerae strain A1552

52.093

100

0.523