Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   JHS79_RS05165 Genome accession   NZ_CP068641
Coordinates   1127730..1129988 (+) Length   752 a.a.
NCBI ID   WP_140125598.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain VP157     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1125053..1149641 1127730..1129988 within 0


Gene organization within MGE regions


Location: 1125053..1149641
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHS79_RS05150 (JHS79_05135) lolD 1125053..1125760 (+) 708 WP_140125600.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  JHS79_RS05155 (JHS79_05140) lolE 1125763..1127007 (+) 1245 WP_015296461.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  JHS79_RS05160 (JHS79_05145) - 1127212..1127721 (-) 510 WP_005456245.1 DUF2062 domain-containing protein -
  JHS79_RS05165 (JHS79_05150) comEC 1127730..1129988 (+) 2259 WP_140125598.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  JHS79_RS05170 (JHS79_05155) msbA 1130020..1131768 (+) 1749 WP_025610353.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  JHS79_RS05175 (JHS79_05160) lpxK 1131774..1132781 (+) 1008 WP_140125592.1 tetraacyldisaccharide 4'-kinase -
  JHS79_RS05180 (JHS79_05165) - 1132762..1132941 (+) 180 WP_005378451.1 Trm112 family protein -
  JHS79_RS05185 (JHS79_05170) kdsB 1132941..1133696 (+) 756 WP_237301193.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  JHS79_RS05190 (JHS79_05175) - 1133774..1135333 (-) 1560 WP_005456192.1 SpoVR family protein -
  JHS79_RS05195 (JHS79_05180) - 1135345..1136616 (-) 1272 WP_005481863.1 YeaH/YhbH family protein -
  JHS79_RS05200 (JHS79_05185) - 1136664..1138598 (-) 1935 WP_005456210.1 PrkA family serine protein kinase -
  JHS79_RS05205 (JHS79_05190) - 1139088..1139588 (-) 501 WP_005456271.1 YfbU family protein -
  JHS79_RS05210 (JHS79_05195) - 1139743..1140411 (-) 669 WP_005495910.1 energy-coupling factor ABC transporter permease -
  JHS79_RS05215 (JHS79_05200) pflA 1140572..1141312 (-) 741 WP_005456250.1 pyruvate formate lyase 1-activating protein -
  JHS79_RS05220 (JHS79_05205) - 1141459..1142436 (-) 978 WP_005481800.1 lipid A deacylase LpxR family protein -
  JHS79_RS05225 (JHS79_05210) pflB 1142589..1144865 (-) 2277 WP_005456189.1 formate C-acetyltransferase -
  JHS79_RS05230 (JHS79_05215) - 1145172..1146719 (-) 1548 WP_005456280.1 DUF3360 family protein -
  JHS79_RS05235 (JHS79_05220) - 1147176..1148636 (+) 1461 WP_005481901.1 flagellar sheath protein A -
  JHS79_RS05240 (JHS79_05225) - 1148871..1149641 (+) 771 WP_025631906.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 752 a.a.        Molecular weight: 84705.21 Da        Isoelectric Point: 9.4827

>NTDB_id=530155 JHS79_RS05165 WP_140125598.1 1127730..1129988(+) (comEC) [Vibrio parahaemolyticus strain VP157]
MTLLEKSWTLALFVASVISSAWWPTMPDWRWLLLGIITTGSIIKLRRGLISIGVIVGFMVVIVHGNIMEYQRQALFQAGE
NSTIIGRVDSSFTQISHGYEGVVAIKQVNTHTLLPFLKPKVRLITPFPLAVNSEFTTNVLIKPIIGLRNEAGFDAEKQSM
GSGVVARAVVTKDSYWVIRTSSSWRESIIQTVERDISRLEHFALIKALAFADRTGLTKEDWQSLRDSGLLHLVSISGLHI
GMALTFGLALGGLIRLVMPRYWFLPSVSGLAFAIVYAWLADFSLPTTRAVSVCIIYIALKYWLVHWSPWRVLLLAVALQL
FFQPFASFSLSFWLSYLSVGAVLFAVNTVQDSKEGRLGKLRILLLTQLILSLLIVPVSGYFFSGFSWSSLVYNLVFIPWF
GFVVVPIMFAALIASLLFPMLATVLWYLLDVFLVPLSWSVRYAIGTWQPISAEWTFVIAVVSVVLVLRHVMPSYVWMFVC
VIVVMTGLFPKQYNQTWRIDVLDVGHGLAVLVEKEGRVLLYDTGKAWQNGSIAEQVITPVLHRRGYSSVDTMILSHADND
HAGGRKVIEQYFSPKNKLSSQSFLHYQPCIAAEKWKWQGLNMEVLWPPKPVVRAYNPHSCVISLEDPSTGFKMLFTGDIE
AISEWILLREPEKLRSDVMLVPHHGSKTSSNPKFINVVEPSLAIASTAKLNQWGMPAPEVVQAYTDSGVSWLDTGSDGQI
TILLDGNNWRFESKRRETIEPWYRQMLRNRVE

Nucleotide


Download         Length: 2259 bp        

>NTDB_id=530155 JHS79_RS05165 WP_140125598.1 1127730..1129988(+) (comEC) [Vibrio parahaemolyticus strain VP157]
ATGACTCTCTTAGAAAAAAGTTGGACCTTGGCGTTATTTGTCGCGAGCGTAATTTCGTCTGCATGGTGGCCGACGATGCC
GGATTGGCGTTGGTTGCTGCTGGGAATAATTACCACTGGCTCAATAATTAAATTACGTCGAGGCTTAATTAGCATAGGCG
TAATTGTGGGCTTTATGGTTGTCATCGTCCACGGCAATATTATGGAGTATCAGAGACAAGCCCTTTTTCAAGCAGGTGAG
AATAGTACCATAATTGGTAGAGTTGACAGCTCTTTTACGCAAATAAGTCACGGATATGAAGGTGTCGTAGCGATAAAACA
AGTGAATACTCACACTCTGTTACCTTTTCTTAAACCTAAAGTCCGCCTTATAACGCCATTCCCACTAGCTGTTAACAGTG
AGTTTACGACTAACGTTTTGATTAAGCCCATTATCGGCCTCAGAAATGAAGCGGGGTTCGACGCAGAAAAACAGTCAATG
GGAAGTGGTGTTGTTGCAAGAGCGGTCGTAACTAAAGATTCATACTGGGTCATTCGTACTTCTTCGTCTTGGCGCGAGTC
GATTATTCAAACTGTTGAGCGTGATATTTCTCGCCTTGAGCACTTTGCTCTAATCAAAGCACTGGCTTTTGCTGATCGCA
CTGGGCTTACCAAAGAGGATTGGCAGTCTCTGCGTGACAGCGGACTACTGCATCTTGTATCAATTTCTGGTTTACACATT
GGGATGGCATTGACGTTTGGGCTCGCCCTTGGTGGGCTTATTCGGCTTGTTATGCCGCGATATTGGTTTCTACCATCAGT
GAGTGGGTTGGCGTTTGCCATTGTTTACGCTTGGCTTGCTGATTTTTCTTTGCCGACGACCCGAGCCGTTTCTGTTTGTA
TCATCTATATTGCTTTGAAGTATTGGCTTGTTCATTGGAGTCCATGGCGCGTACTGTTATTGGCTGTGGCGTTGCAACTT
TTCTTCCAACCTTTTGCTTCTTTTAGTTTGAGTTTTTGGCTGTCTTATTTATCCGTTGGTGCCGTTTTGTTTGCGGTTAA
CACAGTGCAAGACTCGAAGGAAGGTCGTTTGGGAAAGTTGCGGATACTTCTGTTGACTCAACTGATACTGAGCTTATTGA
TTGTCCCGGTCAGTGGCTATTTTTTCTCTGGATTTAGCTGGTCTTCTTTAGTCTACAATTTGGTTTTCATTCCTTGGTTT
GGCTTTGTTGTCGTTCCAATCATGTTTGCTGCTTTAATCGCGTCATTGCTCTTTCCTATGTTGGCGACGGTTCTATGGTA
TTTGCTTGACGTATTCCTTGTGCCACTAAGTTGGTCGGTTCGATATGCCATAGGAACTTGGCAACCCATTAGTGCCGAGT
GGACATTTGTTATTGCTGTAGTGAGTGTCGTGCTCGTTTTAAGACATGTTATGCCTAGTTACGTTTGGATGTTTGTCTGT
GTAATTGTTGTGATGACCGGGTTGTTTCCTAAGCAATATAACCAAACTTGGCGTATTGATGTGCTTGATGTCGGGCATGG
GTTGGCGGTACTGGTTGAAAAAGAAGGGAGAGTTTTACTCTATGATACGGGCAAGGCTTGGCAAAACGGCAGTATAGCTG
AGCAAGTGATTACGCCAGTACTGCACCGCAGAGGCTACTCAAGTGTCGATACGATGATTTTAAGTCATGCCGATAATGAC
CATGCTGGCGGCCGAAAAGTGATAGAACAGTACTTTTCACCTAAAAACAAACTAAGTAGCCAGAGCTTTTTACATTATCA
GCCTTGTATTGCTGCTGAGAAATGGAAGTGGCAAGGGTTGAACATGGAGGTACTTTGGCCTCCTAAACCTGTAGTACGTG
CATACAACCCCCACTCTTGTGTCATCAGTCTGGAAGACCCTAGTACAGGTTTTAAAATGTTGTTTACTGGTGATATCGAA
GCCATCAGCGAATGGATACTGCTTCGAGAGCCAGAAAAGCTGCGCAGTGATGTAATGCTAGTGCCACATCATGGAAGCAA
AACCTCTTCTAACCCTAAGTTTATCAATGTTGTTGAGCCTAGCTTGGCTATTGCTTCAACGGCAAAACTAAACCAGTGGG
GAATGCCCGCACCTGAAGTCGTTCAGGCCTATACCGATAGTGGTGTTAGTTGGTTAGACACTGGAAGTGATGGCCAAATA
ACAATCTTACTTGATGGCAATAACTGGCGTTTTGAAAGTAAACGTCGTGAGACAATTGAGCCTTGGTATAGGCAGATGCT
GCGTAACCGAGTAGAATAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(208-466)

Metallo-beta-lactamase superfamily (Lactamase_B)

(504-678)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio parahaemolyticus RIMD 2210633

98.67

100

0.987
  comEC Vibrio campbellii strain DS40M4

66.356

100

0.664
  comEC Vibrio cholerae strain A1552

41.612

100

0.419