Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   JHT10_RS22595 Genome accession   NZ_CP068631
Coordinates   3035403..3036047 (+) Length   214 a.a.
NCBI ID   WP_005480993.1    Uniprot ID   Q87LA2
Organism   Vibrio parahaemolyticus strain TJ-20     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3030403..3041047
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHT10_RS22580 (JHT10_22540) - 3030887..3032332 (-) 1446 WP_029804051.1 MSHA biogenesis protein MshI -
  JHT10_RS22585 (JHT10_22545) csrD 3032344..3034353 (-) 2010 WP_025547508.1 RNase E specificity factor CsrD -
  JHT10_RS22590 (JHT10_22550) ssb 3034594..3035124 (-) 531 WP_005466625.1 single-stranded DNA-binding protein Machinery gene
  JHT10_RS22595 (JHT10_22555) qstR 3035403..3036047 (+) 645 WP_005480993.1 LuxR C-terminal-related transcriptional regulator Regulator
  JHT10_RS22600 (JHT10_22560) galU 3036305..3037177 (+) 873 WP_005466627.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  JHT10_RS22605 (JHT10_22565) uvrA 3037315..3040137 (+) 2823 WP_029805580.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24386.20 Da        Isoelectric Point: 8.7760

>NTDB_id=530096 JHT10_RS22595 WP_005480993.1 3035403..3036047(+) (qstR) [Vibrio parahaemolyticus strain TJ-20]
MRKSAYARKLFLISMEDDAAQKVASLEKYIDMSIPVISTDALMEAKPEHRNKILLIDFSEHKSLVQSIKNLPLVWKNFET
VVFNVPKRLTTDELLAFGQLKGLFYSEDSLEQVGEGLKGIVNGQNWLPRNVTSQLLHYYRNVINTHTAPATVDLTIRELQ
VLRCLQAGASNSQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=530096 JHT10_RS22595 WP_005480993.1 3035403..3036047(+) (qstR) [Vibrio parahaemolyticus strain TJ-20]
GTGAGAAAGTCGGCTTACGCAAGAAAGCTATTTCTGATTAGTATGGAAGACGATGCTGCGCAGAAAGTCGCATCATTAGA
AAAGTACATCGATATGAGCATTCCTGTAATCTCAACCGATGCCCTAATGGAAGCGAAACCCGAACATCGAAATAAAATTC
TACTCATTGACTTCAGTGAACATAAATCACTCGTTCAATCGATTAAAAACCTGCCATTGGTTTGGAAGAACTTTGAGACG
GTCGTATTCAACGTTCCAAAACGCCTCACTACGGATGAACTGCTCGCCTTCGGTCAATTAAAAGGCTTGTTTTACAGCGA
AGATTCTTTAGAACAAGTAGGCGAAGGACTGAAAGGCATTGTCAACGGGCAAAACTGGCTACCACGCAACGTAACCAGCC
AACTGCTGCACTACTATCGAAATGTGATAAATACCCACACCGCGCCAGCAACCGTCGATCTCACCATTCGCGAACTGCAA
GTGCTGCGTTGTCTGCAAGCTGGAGCATCGAATAGCCAGATGGCAGAAGAACTGTTTGTTAGCGAATTTACGATCAAGTC
GCACCTGTATCAGATCTTTAAAAAGCTCTCAGTGAAAAACCGAGTTCAAGCCATCGCTTGGGCCGATCAAAACTTGATGT
CTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87LA2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio parahaemolyticus RIMD 2210633

100

100

1
  qstR Vibrio campbellii strain DS40M4

89.252

100

0.893
  qstR Vibrio cholerae strain A1552

52.093

100

0.523