Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   JHS95_RS01390 Genome accession   NZ_CP068627
Coordinates   292378..293010 (-) Length   210 a.a.
NCBI ID   WP_005381432.1    Uniprot ID   U2ZZI4
Organism   Vibrio parahaemolyticus strain LH80     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 287378..298010
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHS95_RS01375 (JHS95_01380) astA 288694..289713 (+) 1020 WP_005458129.1 arginine N-succinyltransferase -
  JHS95_RS01380 (JHS95_01385) astD 289742..291199 (+) 1458 WP_237301908.1 succinylglutamate-semialdehyde dehydrogenase -
  JHS95_RS01385 (JHS95_01390) - 291442..292233 (+) 792 WP_017449501.1 DUF1338 domain-containing protein -
  JHS95_RS01390 (JHS95_01395) crp 292378..293010 (-) 633 WP_005381432.1 cAMP-activated global transcriptional regulator CRP Regulator
  JHS95_RS01395 (JHS95_01400) - 293251..294120 (-) 870 WP_005458134.1 phosphoribulokinase -
  JHS95_RS01400 (JHS95_01405) - 294246..294458 (-) 213 WP_005458136.1 YheU family protein -
  JHS95_RS01405 (JHS95_01410) - 294492..295499 (-) 1008 WP_140052391.1 hydrolase -
  JHS95_RS01410 (JHS95_01415) - 295589..296074 (-) 486 WP_140061980.1 TIGR02444 family protein -
  JHS95_RS01415 (JHS95_01420) - 296071..297990 (-) 1920 WP_140207925.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23665.48 Da        Isoelectric Point: 7.8388

>NTDB_id=530013 JHS95_RS01390 WP_005381432.1 292378..293010(-) (crp) [Vibrio parahaemolyticus strain LH80]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMARRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=530013 JHS95_RS01390 WP_005381432.1 292378..293010(-) (crp) [Vibrio parahaemolyticus strain LH80]
ATGGTTCTAGGTAAACCTCAAACCGACCCAACATTAGAGTGGTTTCTTTCACACTGTCATATTCATAAGTACCCATCAAA
GAGCACGCTAATTCACGCAGGTGAAAAAGCTGAAACGTTGTACTACATCGTTAAAGGCTCTGTTGCGGTTCTTATCAAGG
ACGAAGAAGGTAAGGAAATGATTCTTTCTTACCTAAACCAAGGTGACTTTATTGGTGAACTTGGTCTATTCGAAGAAGAC
CAAGAGCGTACAGCTTGGGTTCGCGCTAAATCTCCTTGTGAAGTTGCTGAAATTTCTTTCAAGAAGTTCCGTCAGCTTAT
CCAAGTAAACCCAGACATCCTAATGCGTCTTTCTGCGCAGATGGCTCGTCGTCTTCAAGTAACTAGCCAAAAAGTGGGTG
ACCTAGCGTTCCTAGACGTAACTGGTCGTATCGCTCAGACGCTTCTGAACCTTGCTAAACAACCAGATGCGATGACTCAC
CCAGACGGCATGCAAATCAAGATCACTCGTCAAGAAATCGGTCAAATCGTTGGCTGTTCTCGTGAGACAGTAGGTCGTAT
CTTGAAGATGCTAGAAGAGCAGAACCTAATCTCTGCGCACGGTAAAACTATCGTTGTTTACGGTACTCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB U2ZZI4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

98.095

100

0.981
  crp Haemophilus influenzae Rd KW20

75.49

97.143

0.733
  crp Acinetobacter baumannii D1279779

47.826

98.571

0.471