Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   JI735_RS19580 Genome accession   NZ_CP068595
Coordinates   4451921..4452400 (+) Length   159 a.a.
NCBI ID   WP_039833858.1    Uniprot ID   A0A974SAM1
Organism   Paenibacillus sonchi strain LMG 24727     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4446921..4457400
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JI735_RS19545 (JI735_19545) - 4448194..4448670 (+) 477 WP_039833867.1 hypothetical protein -
  JI735_RS19550 (JI735_19550) - 4448670..4449011 (+) 342 WP_039833865.1 helix-turn-helix domain-containing protein -
  JI735_RS19555 (JI735_19555) - 4449102..4449383 (+) 282 WP_039833863.1 transcriptional regulator -
  JI735_RS19560 (JI735_19560) - 4449588..4449950 (+) 363 WP_039833861.1 hypothetical protein -
  JI735_RS19565 (JI735_19565) - 4450002..4450913 (+) 912 WP_202676341.1 hypothetical protein -
  JI735_RS19575 (JI735_19575) - 4451223..4451876 (+) 654 WP_039833860.1 hypothetical protein -
  JI735_RS19580 (JI735_19580) ssbA 4451921..4452400 (+) 480 WP_039833858.1 single-stranded DNA-binding protein Machinery gene
  JI735_RS19585 (JI735_19585) - 4452650..4452820 (+) 171 WP_157771293.1 hypothetical protein -
  JI735_RS19590 (JI735_19590) - 4452825..4453496 (+) 672 WP_083886493.1 RecB family exonuclease -
  JI735_RS19595 (JI735_19595) - 4453525..4454412 (+) 888 WP_039833856.1 hypothetical protein -
  JI735_RS19600 (JI735_19600) - 4454516..4454875 (+) 360 WP_233475974.1 hypothetical protein -
  JI735_RS19605 (JI735_19605) radC 4455068..4455457 (+) 390 WP_267919295.1 RadC family protein -
  JI735_RS19610 (JI735_19610) - 4455672..4456151 (+) 480 WP_051051601.1 hypothetical protein -
  JI735_RS19615 (JI735_19615) - 4456212..4456592 (+) 381 WP_157771292.1 DUF5348 domain-containing protein -
  JI735_RS19620 (JI735_19620) - 4456604..4456996 (+) 393 WP_039833852.1 zinc-finger-containing protein -
  JI735_RS19625 (JI735_19625) - 4457037..4457324 (+) 288 WP_051051599.1 hypothetical protein -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 17060.68 Da        Isoelectric Point: 9.5031

>NTDB_id=529741 JI735_RS19580 WP_039833858.1 4451921..4452400(+) (ssbA) [Paenibacillus sonchi strain LMG 24727]
MSLNQVVLIGRLTKEAELRYTPAGVAVAQFTLAVDRPFTNQGGEREADFIPVVVWKTVAENVANYLNKGSQVAVTGRIQI
RNYENNEGRRVYVTEVIGQNVQFLTPNQNGNSSGQQSSGGKSSGGSTNRNGQSNRQNGSNQGTNSGGNAWGINDADLPF

Nucleotide


Download         Length: 480 bp        

>NTDB_id=529741 JI735_RS19580 WP_039833858.1 4451921..4452400(+) (ssbA) [Paenibacillus sonchi strain LMG 24727]
ATGAGTTTGAATCAAGTGGTACTGATTGGTCGCCTGACCAAAGAAGCTGAGTTGCGGTATACGCCTGCTGGTGTTGCCGT
GGCCCAGTTTACGCTTGCGGTGGATCGGCCTTTCACGAATCAAGGTGGTGAGCGCGAAGCCGACTTTATTCCAGTTGTTG
TTTGGAAGACGGTTGCTGAAAATGTCGCGAACTACCTGAATAAAGGGAGTCAGGTGGCGGTGACCGGACGCATTCAGATT
CGGAACTATGAGAATAACGAGGGACGGCGCGTTTATGTCACGGAGGTTATTGGGCAAAACGTTCAGTTTTTGACTCCTAA
TCAAAACGGTAACAGCTCGGGCCAACAATCCTCTGGAGGGAAGAGTTCAGGCGGCAGTACAAACCGAAATGGACAGTCCA
ATCGTCAAAATGGTTCGAATCAAGGGACGAATTCTGGGGGTAATGCCTGGGGAATTAACGATGCGGATCTTCCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

51.744

100

0.56
  ssb Latilactobacillus sakei subsp. sakei 23K

45.562

100

0.484
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.143

66.038

0.377