Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   JI735_RS08545 Genome accession   NZ_CP068595
Coordinates   1853887..1854387 (-) Length   166 a.a.
NCBI ID   WP_025706807.1    Uniprot ID   A0A974SEU3
Organism   Paenibacillus sonchi strain LMG 24727     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1848887..1859387
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JI735_RS08530 (JI735_08530) opp4A 1849161..1850876 (-) 1716 WP_039832211.1 oligopeptide ABC transporter substrate-binding protein -
  JI735_RS08535 (JI735_08535) - 1851057..1853054 (-) 1998 WP_039832200.1 endonuclease MutS2 -
  JI735_RS35470 - 1853156..1853326 (-) 171 WP_233185375.1 hypothetical protein -
  JI735_RS08540 (JI735_08540) rpsR 1853593..1853865 (-) 273 WP_020425713.1 30S ribosomal protein S18 -
  JI735_RS08545 (JI735_08545) ssbA 1853887..1854387 (-) 501 WP_025706807.1 single-stranded DNA-binding protein Machinery gene
  JI735_RS08550 (JI735_08550) rpsF 1854435..1854680 (-) 246 WP_325175589.1 30S ribosomal protein S6 -
  JI735_RS37230 - 1854655..1854720 (-) 66 Protein_1699 30S ribosomal protein S6 -
  JI735_RS08555 (JI735_08555) - 1854940..1855137 (+) 198 WP_039832202.1 YjzC family protein -
  JI735_RS08565 (JI735_08565) - 1855647..1855856 (-) 210 WP_039832203.1 DUF951 domain-containing protein -
  JI735_RS08570 (JI735_08570) - 1855856..1856884 (-) 1029 WP_039832204.1 mechanosensitive ion channel domain-containing protein -
  JI735_RS08575 (JI735_08575) - 1856877..1857149 (-) 273 WP_039832205.1 DUF3343 domain-containing protein -
  JI735_RS08580 (JI735_08580) yyaC 1857315..1857923 (+) 609 WP_039832206.1 spore protease YyaC -
  JI735_RS08585 (JI735_08585) - 1857895..1858395 (-) 501 WP_039832207.1 DUF4446 family protein -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18350.11 Da        Isoelectric Point: 4.8280

>NTDB_id=529733 JI735_RS08545 WP_025706807.1 1853887..1854387(-) (ssbA) [Paenibacillus sonchi strain LMG 24727]
MLNRIILIGRLTRDPELRYTPAGVAVTQFTLAVDRNFTGQNGEREADFIPVVTWRQLAETCANYLRKGRLTAVEGRIQVR
NYENNEGKRVYVTEVIADNVRFLESSQNREGGNAPSGGNVPEEPSYGGGGNSGRGNNNNFSRNNNNQDPFSGDGKPIDIS
DDDLPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=529733 JI735_RS08545 WP_025706807.1 1853887..1854387(-) (ssbA) [Paenibacillus sonchi strain LMG 24727]
TTGTTGAACCGTATCATTCTGATCGGCCGGTTGACCCGTGACCCGGAACTTCGTTATACTCCTGCTGGTGTTGCTGTAAC
GCAGTTTACGCTCGCCGTAGACCGCAACTTTACGGGCCAGAACGGTGAACGCGAAGCGGACTTCATCCCGGTGGTAACCT
GGAGACAGCTGGCTGAGACCTGTGCCAATTACTTGCGCAAAGGACGTCTGACAGCGGTGGAAGGCCGCATCCAAGTACGG
AATTACGAGAATAACGAAGGCAAACGTGTATACGTTACTGAAGTTATTGCCGATAATGTCCGTTTTCTGGAATCCTCGCA
GAATCGTGAAGGCGGCAATGCGCCAAGTGGCGGGAATGTACCTGAAGAACCATCTTATGGTGGCGGCGGTAACAGTGGAC
GCGGAAATAACAATAATTTCTCGCGTAACAACAATAATCAAGATCCTTTTTCGGGCGATGGAAAACCGATCGATATATCG
GACGATGATTTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.721

100

0.608
  ssb Latilactobacillus sakei subsp. sakei 23K

51.176

100

0.524
  ssb Glaesserella parasuis strain SC1401

34.463

100

0.367