Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsF   Type   Machinery gene
Locus tag   JL476_RS07900 Genome accession   NZ_CP068586
Coordinates   1511594..1512769 (-) Length   391 a.a.
NCBI ID   WP_002781160.1    Uniprot ID   A0A0Q2ISE7
Organism   Campylobacter coli strain CC19CH076     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1506594..1517769
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JL476_RS07870 (JL476_07875) - 1507135..1507476 (+) 342 WP_002779261.1 hypothetical protein -
  JL476_RS07875 (JL476_07880) flgM 1507539..1507736 (+) 198 WP_002779262.1 flagellar biosynthesis anti-sigma factor FlgM -
  JL476_RS07880 (JL476_07885) - 1507779..1508213 (+) 435 WP_002779263.1 flagellar protein FlgN -
  JL476_RS07885 (JL476_07890) flgK 1508223..1510049 (+) 1827 WP_212145206.1 flagellar hook-associated protein FlgK -
  JL476_RS07890 (JL476_07895) - 1510066..1510830 (+) 765 WP_212145203.1 TIGR02757 family protein -
  JL476_RS07895 (JL476_07900) - 1510833..1511597 (+) 765 WP_002781157.1 TSUP family transporter -
  JL476_RS07900 (JL476_07905) ctsF 1511594..1512769 (-) 1176 WP_002781160.1 type II secretion system F family protein Machinery gene
  JL476_RS07905 (JL476_07910) ctsE 1512756..1514318 (-) 1563 WP_002779312.1 GspE/PulE family protein Machinery gene
  JL476_RS07910 (JL476_07915) - 1514311..1514907 (-) 597 WP_002779313.1 CDC27 family protein -
  JL476_RS07915 (JL476_07920) ctsP 1514904..1515500 (-) 597 WP_002779314.1 ATP-binding protein Machinery gene
  JL476_RS07920 (JL476_07925) ctsD 1515493..1516911 (-) 1419 WP_002779315.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  JL476_RS07925 (JL476_07930) ctsR 1516889..1517200 (-) 312 WP_002779316.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 45518.35 Da        Isoelectric Point: 9.4461

>NTDB_id=529694 JL476_RS07900 WP_002781160.1 1511594..1512769(-) (ctsF) [Campylobacter coli strain CC19CH076]
MKLYELEIKGKTKQTKHLRAKNLNEAQAKAIAKKWEILNIKEIQKASFKRLDDARFILFFQELSLLCEVGISIKDALKEL
DKIYSHKMIAKLCDNLNLGQNLSLAFENANFGLTHAELALIKTSQNTGKLSEIFMQISRLRQNNVENEQRVKKALRYPLI
VFLSVCAAFVLLMLFVVPNFKDLFEDLNLALPFITELIIYIYNFLDKYILLVFCLIALILFLTLFLYRKYYFFSYFCDSL
LLKLPLLSKFIIYQQNYSFFMIFSLLLKSGISLLEAFKLATLALNNKKVLLYYQEIRTFMDSGLEISHAFKKVDLFDPLV
FSMLSIAMKSSKLEFLSEEIAKYYKNKSENLMDKFLSFLEPIMTLWVAILVLFLALGIFLPIWELSSGVNF

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=529694 JL476_RS07900 WP_002781160.1 1511594..1512769(-) (ctsF) [Campylobacter coli strain CC19CH076]
ATGAAGCTTTATGAGCTCGAGATTAAAGGCAAAACAAAACAGACAAAGCATTTAAGGGCTAAAAATTTAAACGAAGCTCA
AGCAAAAGCTATCGCTAAAAAATGGGAAATTTTAAATATCAAAGAGATACAAAAAGCAAGTTTTAAAAGATTAGATGATG
CAAGATTTATCCTTTTCTTTCAAGAATTATCTTTGCTTTGCGAAGTAGGAATCAGCATAAAAGATGCTTTAAAGGAGCTT
GATAAAATATATTCTCACAAGATGATTGCCAAGCTTTGCGATAATTTAAATTTAGGACAAAATTTAAGCCTTGCTTTTGA
AAATGCAAATTTTGGACTTACTCATGCGGAATTAGCCCTTATTAAAACTTCCCAAAACACAGGAAAATTAAGTGAAATTT
TCATGCAAATTTCAAGATTAAGACAAAATAATGTAGAAAATGAACAAAGAGTCAAAAAAGCTTTAAGATATCCTTTGATT
GTTTTTTTAAGTGTGTGCGCGGCTTTTGTTTTACTCATGCTTTTTGTTGTGCCTAATTTTAAAGATTTATTTGAGGATTT
AAATTTAGCCTTACCCTTTATAACCGAGCTTATAATTTATATTTATAATTTTTTGGATAAGTATATTTTGCTTGTGTTTT
GTTTGATCGCACTTATTTTATTTCTTACTTTATTTTTGTATAGAAAATATTATTTCTTTTCATATTTTTGTGATAGCTTG
CTTTTAAAACTCCCTTTGTTGTCTAAATTTATTATTTATCAGCAAAATTATTCTTTTTTTATGATTTTCTCTTTACTTTT
AAAAAGCGGCATTTCTCTTTTGGAAGCTTTTAAATTAGCCACTTTGGCCTTAAATAATAAAAAGGTATTATTGTATTATC
AAGAAATTAGAACATTTATGGATTCTGGCCTTGAAATAAGTCACGCCTTTAAAAAAGTAGATCTTTTTGATCCTTTGGTT
TTTTCTATGTTGAGTATAGCTATGAAAAGTTCTAAGCTTGAGTTTTTGAGCGAGGAGATTGCGAAATATTATAAAAACAA
AAGTGAAAATTTAATGGACAAGTTTTTAAGCTTTTTAGAACCTATAATGACTTTATGGGTTGCGATTTTAGTATTGTTTT
TAGCACTTGGAATTTTTTTACCTATATGGGAACTTAGCTCAGGAGTAAATTTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(262-381)

Type II secretion system (T2SS), protein F (T2SSF)

(59-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Q2ISE7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsF Campylobacter jejuni subsp. jejuni 81-176

60.66

100

0.611