Detailed information NTG0529247

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: JLK41_RS08320
• Genome accession: NZ_CP068551
• Coordinates: 1781736..1783949 (+)
• Length: 737 a.a.
• NCBI ID: WP_210391203.1
• Uniprot ID: -
• Organism: Pseudomonas khazarica strain ODT-83
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1776736..1788949

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JLK41_RS08295 (JLK41_08295)	lolD	1777529..1778230 (+)	702	WP_037048593.1	lipoprotein-releasing ABC transporter ATP-binding protein LolD	-
JLK41_RS08300 (JLK41_08300)	-	1778230..1779474 (+)	1245	WP_210390748.1	lipoprotein-releasing ABC transporter permease subunit	-
JLK41_RS08305 (JLK41_08305)	-	1779482..1780090 (-)	609	WP_210390749.1	LysE family translocator	-
JLK41_RS08310 (JLK41_08310)	-	1780223..1781032 (-)	810	WP_150608884.1	AraC family transcriptional regulator	-
JLK41_RS08315 (JLK41_08315)	-	1781073..1781597 (-)	525	WP_150608886.1	DUF2062 domain-containing protein	-
JLK41_RS08320 (JLK41_08320)	comA	1781736..1783949 (+)	2214	WP_210391203.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
JLK41_RS08325 (JLK41_08325)	exbB	1784022..1784654 (+)	633	WP_037048580.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
JLK41_RS08330 (JLK41_08330)	-	1784651..1785079 (+)	429	WP_037048577.1	ExbD/TolR family protein	-
JLK41_RS08335 (JLK41_08335)	lpxK	1785080..1786084 (+)	1005	WP_210390750.1	tetraacyldisaccharide 4'-kinase	-
JLK41_RS08340 (JLK41_08340)	-	1786105..1786290 (+)	186	WP_003245207.1	Trm112 family protein	-
JLK41_RS08345 (JLK41_08345)	kdsB	1786291..1787055 (+)	765	WP_210390751.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
JLK41_RS08350 (JLK41_08350)	-	1787055..1787519 (+)	465	WP_134676230.1	low molecular weight protein-tyrosine-phosphatase	-
JLK41_RS08355 (JLK41_08355)	murB	1787516..1788535 (+)	1020	WP_210390752.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 737 a.a.
• Molecular weight: 79196.08 Da
• Isoelectric Point: 9.9982

>NTDB_id=529247 JLK41_RS08320 WP_210391203.1 1781736..1783949(+) (comA) [Pseudomonas khazarica strain ODT-83]
MLALALGLLALRFLPGLPSAAVLLLMAGCALALLFSRGYPLGFFLLGLAWACCSAQWALDDRLGVALDGRTLWLEGQVVG
LPEAADGVLRFQLQDARSRRAELPARMRLAWYGGPPVLAGERWRLAVNLKRPHGLVNPQRFDYEAWLLAQRIGATGTIKA
GERLAPATDLGGWRDALRQRLLAVPAWGRQGGIAALVLGDGSGLTAEDWRLLQHTGTVHLMVISGQHIALLSGFLYGLVA
LLARLGSWPQRLPWLPCACALALGGALIYGLLAGFEVPVRRACVMVALVLLWRLRFRHLGPAWPLLAALLVVLLLEPLAS
LQPGFWLSFSAVAVLALAFAGRLGAWGWWRGLTRAQWTTAIGLLPMMLILGLPVSSSGPLANLLAVPWVGLVVVPLALFG
TLLLPVPLLGEGLLWLAGGALQLLFALLGLIAGWLPAWLPSELPWWVWSLAALGAALLLLPAGVPLRLPGLALLLPALLV
PAQGPEDGQADVWVLDVGQGLSVLVRTREHSLLYDAGPRFGDFDSGERIVLPSLRALNLRRLDLLLVSHADNDHAGGATA
VAAGMPVARVISGEPARLARSLAAEACESGRSWQWDGVTFRLWQWPQAAPGNPRSCVLQVEAGGERLLLTGDIDAAAEQE
LVQSGFPLASHWLLAPHHGSRSSSSQPFIDAVGPQHVLITRSRHNAFGHPHPQVLARYRAAGVAVHDTAYTGALHLRLGK
WLAPRGLRSEARFWREK

Nucleotide

• Length: 2214 bp

>NTDB_id=529247 JLK41_RS08320 WP_210391203.1 1781736..1783949(+) (comA) [Pseudomonas khazarica strain ODT-83]
ATGTTGGCGCTGGCCCTGGGTTTGCTGGCGTTGCGCTTTCTGCCGGGCCTGCCGTCCGCCGCGGTGCTGCTGCTCATGGC
CGGTTGCGCGCTCGCGCTGCTGTTCTCGCGGGGCTATCCCCTGGGCTTCTTCCTGCTGGGGCTGGCCTGGGCCTGCTGCT
CCGCGCAATGGGCACTGGATGATCGCCTGGGCGTGGCGCTGGATGGGCGCACCCTGTGGCTGGAAGGGCAGGTGGTCGGC
TTGCCGGAAGCGGCCGACGGTGTGCTTCGCTTCCAGTTGCAGGACGCCCGTTCACGGCGTGCCGAACTGCCCGCCAGGAT
GCGCCTGGCCTGGTATGGCGGGCCTCCGGTGCTGGCCGGCGAGCGTTGGCGTCTGGCAGTCAATCTCAAGCGTCCCCATG
GCCTGGTCAATCCGCAGCGTTTCGATTACGAAGCCTGGCTGCTGGCCCAGCGCATCGGCGCCACCGGGACGATCAAGGCG
GGTGAGCGCCTGGCCCCAGCCACTGACCTGGGCGGCTGGCGCGACGCCCTGCGCCAGCGCCTGCTGGCGGTGCCCGCCTG
GGGACGGCAGGGCGGCATCGCCGCACTGGTGCTCGGCGATGGCTCCGGCCTGACGGCGGAGGACTGGCGTCTGTTGCAGC
ACACCGGCACCGTGCACCTGATGGTCATCTCCGGGCAGCACATCGCCCTGCTGTCCGGTTTCCTCTATGGCCTGGTGGCG
CTGCTGGCCAGGCTCGGTTCCTGGCCGCAGCGTCTGCCGTGGTTGCCTTGCGCCTGCGCGCTGGCCCTGGGCGGCGCGCT
GATCTATGGCCTGCTGGCCGGGTTCGAGGTGCCGGTGCGCAGGGCCTGCGTGATGGTTGCCCTGGTGCTGTTGTGGCGCC
TGCGCTTTCGTCACCTGGGCCCTGCCTGGCCGCTGTTGGCGGCCCTGCTGGTGGTGCTGTTGCTGGAGCCGCTGGCTTCC
CTGCAGCCGGGCTTCTGGCTGTCGTTCTCGGCGGTCGCCGTGCTTGCGCTGGCCTTTGCCGGGCGGCTGGGGGCATGGGG
CTGGTGGCGCGGGCTGACGCGTGCGCAATGGACCACGGCGATCGGCCTGTTGCCGATGATGTTGATCCTCGGGCTGCCGG
TCAGCAGCAGCGGGCCTCTGGCCAATCTGCTCGCCGTGCCCTGGGTAGGACTGGTGGTGGTGCCGCTGGCGCTGTTCGGT
ACGCTGCTGTTGCCGGTACCTCTGCTCGGCGAGGGCTTGCTGTGGCTGGCCGGCGGGGCATTGCAGCTGCTCTTCGCGCT
GCTCGGACTGATCGCCGGCTGGTTGCCCGCCTGGCTGCCCAGCGAGTTGCCGTGGTGGGTCTGGTCGTTGGCGGCGCTGG
GGGCCGCGTTGCTGTTGCTGCCTGCCGGCGTGCCGCTGCGCTTGCCGGGGCTGGCGTTGCTGCTGCCCGCGCTGCTGGTA
CCGGCGCAAGGACCCGAGGACGGGCAGGCCGACGTCTGGGTCCTGGATGTCGGCCAGGGCTTGTCGGTTCTGGTGCGGAC
CCGCGAGCACAGCCTGCTGTACGACGCCGGGCCGCGCTTCGGTGACTTCGACAGCGGCGAACGTATCGTCCTGCCGTCGC
TGCGCGCGCTGAACCTCCGACGGCTCGACCTGCTGCTGGTCAGCCACGCCGACAACGATCATGCCGGAGGGGCGACGGCC
GTGGCGGCTGGCATGCCGGTGGCGCGGGTCATCAGTGGCGAGCCGGCGCGTCTCGCGCGAAGCCTGGCTGCCGAGGCCTG
CGAGTCCGGGCGCAGCTGGCAGTGGGATGGCGTGACCTTCAGGTTGTGGCAATGGCCGCAGGCGGCGCCAGGCAACCCGC
GTTCCTGCGTCTTGCAGGTGGAGGCTGGGGGGGAGCGCTTGCTGTTGACCGGCGACATCGATGCCGCGGCCGAACAGGAA
CTGGTGCAATCGGGCTTCCCGCTGGCGTCGCACTGGCTGCTGGCTCCGCACCACGGCAGCCGCAGTTCCTCCAGCCAGCC
CTTCATCGACGCGGTCGGGCCGCAGCACGTGCTGATCACGCGCAGCCGGCACAATGCTTTCGGCCATCCGCACCCGCAGG
TGCTGGCACGTTACCGGGCGGCGGGCGTGGCGGTGCATGACACCGCGTATACCGGTGCGCTGCATCTACGCCTGGGCAAG
TGGCTCGCACCGCGCGGGTTGCGAAGCGAGGCACGCTTCTGGCGGGAAAAATGA

Domains

Predicted by InterproScan.

• Competence protein (Competence) (196-460)

• Metallo-beta-lactamase superfamily (Lactamase_B) (496-674)

• Domain of unknown function (DUF4131) (DUF4131) (16-163)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	66.944	97.693	0.654
comA	Ralstonia pseudosolanacearum GMI1000	37.147	100	0.392