Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   JLK41_RS08325 Genome accession   NZ_CP068551
Coordinates   1784022..1784654 (+) Length   210 a.a.
NCBI ID   WP_037048580.1    Uniprot ID   A0A5P9C5K1
Organism   Pseudomonas khazarica strain ODT-83     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1779022..1789654
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JLK41_RS08305 (JLK41_08305) - 1779482..1780090 (-) 609 WP_210390749.1 LysE family translocator -
  JLK41_RS08310 (JLK41_08310) - 1780223..1781032 (-) 810 WP_150608884.1 AraC family transcriptional regulator -
  JLK41_RS08315 (JLK41_08315) - 1781073..1781597 (-) 525 WP_150608886.1 DUF2062 domain-containing protein -
  JLK41_RS08320 (JLK41_08320) comA 1781736..1783949 (+) 2214 WP_210391203.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  JLK41_RS08325 (JLK41_08325) exbB 1784022..1784654 (+) 633 WP_037048580.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  JLK41_RS08330 (JLK41_08330) - 1784651..1785079 (+) 429 WP_037048577.1 ExbD/TolR family protein -
  JLK41_RS08335 (JLK41_08335) lpxK 1785080..1786084 (+) 1005 WP_210390750.1 tetraacyldisaccharide 4'-kinase -
  JLK41_RS08340 (JLK41_08340) - 1786105..1786290 (+) 186 WP_003245207.1 Trm112 family protein -
  JLK41_RS08345 (JLK41_08345) kdsB 1786291..1787055 (+) 765 WP_210390751.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  JLK41_RS08350 (JLK41_08350) - 1787055..1787519 (+) 465 WP_134676230.1 low molecular weight protein-tyrosine-phosphatase -
  JLK41_RS08355 (JLK41_08355) murB 1787516..1788535 (+) 1020 WP_210390752.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 22843.12 Da        Isoelectric Point: 8.5156

>NTDB_id=529248 JLK41_RS08325 WP_037048580.1 1784022..1784654(+) (exbB) [Pseudomonas khazarica strain ODT-83]
MWELVKAGGWMMLPIILCSIAAAGIVAERLWTLRPARVTPANLLAQVWRWIKDKKLNNQKLKELREHSPLGQILAAGLAN
SKHGREIMKECIEEAAARVIHDLERYLNALGTIAGIAPLLGLLGTVLGMIEIFSSFMGAGMANAPMLAGGISKALITTAA
GLIVAIPALFFHRYLQRRVDELVVGMEQEAIKLVEMVQGDRDVDLGEGKA

Nucleotide


Download         Length: 633 bp        

>NTDB_id=529248 JLK41_RS08325 WP_037048580.1 1784022..1784654(+) (exbB) [Pseudomonas khazarica strain ODT-83]
GTGTGGGAACTGGTCAAAGCTGGCGGCTGGATGATGCTGCCGATCATTCTCTGTTCCATCGCTGCTGCCGGTATCGTTGC
CGAGCGCCTGTGGACCCTGCGGCCCGCCCGCGTCACGCCGGCCAATCTGCTGGCCCAGGTATGGCGCTGGATCAAGGACA
AGAAACTGAACAACCAGAAGCTCAAGGAGCTGCGTGAGCATTCGCCGCTCGGGCAGATCCTGGCTGCTGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAGGCTGCCGCCCGCGTCATTCATGATCTGGAGCGCTACCT
CAATGCCCTCGGCACCATCGCCGGCATCGCACCGTTGCTCGGCCTGCTCGGTACCGTGCTGGGCATGATCGAAATCTTCA
GCTCCTTCATGGGCGCGGGCATGGCCAATGCGCCGATGCTCGCCGGCGGTATCTCCAAGGCGCTGATCACCACTGCAGCA
GGCCTGATCGTGGCGATCCCGGCGCTGTTCTTCCACCGCTACCTGCAACGTCGTGTCGACGAGCTGGTGGTGGGCATGGA
GCAGGAGGCGATCAAGCTGGTGGAGATGGTGCAAGGTGACCGTGACGTCGACCTGGGCGAGGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5P9C5K1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

88.571

100

0.886