Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   K7G42_RS07850 Genome accession   NZ_CP082783
Coordinates   1458492..1460483 (-) Length   663 a.a.
NCBI ID   WP_003103061.1    Uniprot ID   A0ABN0IRW5
Organism   Streptococcus parauberis strain KRS02083     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1453492..1465483
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K7G42_RS07825 (K7G42_07770) dltD 1453797..1455071 (-) 1275 WP_003108243.1 D-alanyl-lipoteichoic acid biosynthesis protein DltD -
  K7G42_RS07830 (K7G42_07775) dltC 1455064..1455303 (-) 240 WP_003107171.1 D-alanine--poly(phosphoribitol) ligase subunit DltC -
  K7G42_RS07835 (K7G42_07780) dltB 1455319..1456578 (-) 1260 WP_003108242.1 D-alanyl-lipoteichoic acid biosynthesis protein DltB -
  K7G42_RS07840 (K7G42_07785) dltA 1456575..1458113 (-) 1539 WP_003108241.1 D-alanine--poly(phosphoribitol) ligase subunit DltA -
  K7G42_RS07845 (K7G42_07790) - 1458123..1458257 (-) 135 WP_037619614.1 teichoic acid D-Ala incorporation-associated protein DltX -
  K7G42_RS07850 (K7G42_07795) uvrB 1458492..1460483 (-) 1992 WP_003103061.1 excinuclease ABC subunit UvrB Machinery gene
  K7G42_RS07855 (K7G42_07800) - 1460653..1462827 (+) 2175 WP_003103441.1 ABC transporter substrate-binding protein/permease -
  K7G42_RS07860 (K7G42_07805) - 1462827..1463567 (+) 741 WP_003107174.1 amino acid ABC transporter ATP-binding protein -
  K7G42_RS07865 (K7G42_07810) - 1463890..1465401 (+) 1512 WP_003108239.1 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 663 a.a.        Molecular weight: 75864.96 Da        Isoelectric Point: 4.6693

>NTDB_id=529243 K7G42_RS07850 WP_003103061.1 1458492..1460483(-) (uvrB) [Streptococcus parauberis strain KRS02083]
MIDKRIDKPFHLVSKYQPSGDQPQAIEELVDNIEGGEKAQILLGATGTGKTFTMSQVINRVNKPTLVIAHNKTLAGQLYG
EFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRHSATSSLLERNDVIVVASVSCIYGLGSPKEYA
DSAVSLRPGQEISRDQLLNQLVDIQFERNDIDFQRGRFRVRGDVVEVFPASRDEHAFRVEFFGDEIDRIREIESLTGKIL
GEVDHLVLFPATHFVTNDEHMETSIAKIQAELEEQLKLFESEGKLLEAQRLKQRTEYDIEMLREMGYTNGVENYSRHMDG
RAAGEPPYTLLDFFPEDFMIMIDESHMTMGQIKGMYNGDQARKKMLVDYGFRLPSALDNRPLRREEFESHVHQIVYVSAT
PGDYEMEQTDTIIEQIIRPTGLLDPEVEIRPSMGQMDDLLGEINTRAEKGERTFITTLTKKMAEDLTDYLKEMGVKVKYM
HSDIKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAARNSEGHVIMYADK
MTESMRKAIDETARRRQIQIDYNTEHDITPKTIKKEIRDLIGISKGKGADVEETSPDYTAMNKSERKEAIKKLQKQMHEA
AEMLDFELAAQIRDIVIELKTMD

Nucleotide


Download         Length: 1992 bp        

>NTDB_id=529243 K7G42_RS07850 WP_003103061.1 1458492..1460483(-) (uvrB) [Streptococcus parauberis strain KRS02083]
ATGATTGATAAACGAATTGATAAACCATTTCACTTGGTTTCTAAATATCAACCTTCTGGGGATCAACCACAAGCTATAGA
AGAGCTGGTTGATAATATTGAAGGAGGTGAAAAGGCCCAGATTTTGCTTGGTGCGACTGGTACTGGTAAGACTTTTACGA
TGAGTCAAGTTATAAACAGAGTGAACAAACCCACGCTTGTTATAGCCCATAATAAAACTTTAGCGGGCCAATTGTATGGT
GAATTTAAAGAGTTTTTCCCTGATAATGCTGTTGAGTATTTTGTATCTTACTATGATTATTATCAACCGGAAGCCTATGT
ACCTTCTAGTGATACCTATATTGAAAAAGATTCTTCGGTCAATGATGAAATTGATAAGCTTCGCCATTCTGCCACATCTT
CTTTGTTAGAACGAAATGATGTTATTGTAGTTGCTTCAGTATCATGTATTTATGGTTTGGGATCACCCAAAGAGTATGCA
GATTCTGCCGTCTCTCTAAGACCTGGTCAAGAAATCTCACGTGATCAATTATTAAACCAATTAGTTGATATTCAATTTGA
ACGCAACGACATTGATTTCCAACGGGGCCGGTTCCGTGTTCGAGGCGATGTTGTTGAAGTCTTTCCGGCTTCTCGCGACG
AGCATGCCTTTCGTGTTGAATTCTTTGGGGACGAAATTGATCGAATCAGAGAGATTGAAAGTCTCACAGGCAAGATACTT
GGCGAAGTTGACCACCTAGTGCTCTTCCCAGCCACCCACTTTGTGACTAATGATGAACACATGGAGACCTCGATAGCAAA
AATTCAAGCAGAACTGGAAGAGCAACTTAAGTTGTTTGAAAGTGAAGGGAAGCTTTTAGAAGCGCAGCGATTAAAACAAA
GAACAGAATATGACATTGAAATGCTCCGAGAAATGGGGTATACAAATGGTGTCGAGAATTATTCGCGTCATATGGATGGT
CGTGCTGCTGGTGAGCCGCCTTATACCCTGCTTGACTTTTTCCCTGAAGATTTCATGATTATGATTGATGAAAGTCACAT
GACCATGGGTCAAATCAAAGGGATGTACAATGGTGACCAAGCCCGTAAGAAAATGCTAGTAGATTATGGTTTTAGACTTC
CTTCTGCGCTTGATAATCGTCCTTTACGTCGTGAGGAATTTGAAAGTCATGTTCATCAGATTGTCTATGTATCTGCCACT
CCAGGCGACTACGAGATGGAACAGACAGATACAATCATTGAGCAAATTATCCGTCCAACTGGACTGTTAGATCCAGAAGT
CGAAATTCGTCCTTCAATGGGACAAATGGATGATTTACTTGGTGAAATTAATACGCGAGCTGAAAAGGGTGAGAGAACCT
TTATTACAACCTTAACTAAAAAGATGGCAGAAGATTTAACAGACTATCTTAAAGAGATGGGGGTTAAGGTCAAGTATATG
CATAGTGATATTAAAACACTAGAACGAACAGAGATTATTCGTGATCTTCGTTTAGGGGTATTTGATGTCTTAATTGGAAT
TAACTTATTGCGTGAAGGAATTGACGTTCCAGAAGTAAGTTTAGTTGCTATTTTAGATGCTGATAAAGAAGGTTTCTTAC
GAAATGAACGGGGTCTGATTCAGACGATTGGTCGTGCAGCTCGTAACTCCGAAGGACATGTTATTATGTATGCTGATAAA
ATGACTGAATCTATGCGGAAAGCTATTGATGAAACTGCTCGTCGTCGTCAAATCCAGATTGACTATAACACAGAACATGA
CATTACGCCAAAAACAATTAAAAAAGAAATTCGTGATTTAATTGGTATCAGTAAAGGCAAAGGTGCTGATGTAGAAGAAA
CAAGTCCTGACTATACTGCAATGAACAAATCAGAACGTAAAGAAGCCATTAAGAAATTGCAAAAACAAATGCATGAAGCA
GCCGAAATGCTTGATTTCGAATTGGCGGCCCAAATTCGTGATATTGTCATTGAATTAAAAACAATGGATTAA

Domains

Predicted by InterProScan.

Ultra-violet resistance protein B (UvrB)

(556-598)

Helicase conserved C-terminal domain (Helicase_C)

(442-549)

Type III restriction enzyme, res subunit (ResIII)

(17-143)

UvrB/uvrC motif (UVR)

(627-660)

UvrB interaction domain (UvrB_inter)

(164-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae R6

85.973

100

0.86
  uvrB Streptococcus pneumoniae D39

85.973

100

0.86
  uvrB Streptococcus pneumoniae TIGR4

85.822

100

0.858