Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   JLK41_RS05075 Genome accession   NZ_CP068551
Coordinates   1114437..1115777 (-) Length   446 a.a.
NCBI ID   WP_134678120.1    Uniprot ID   -
Organism   Pseudomonas khazarica strain ODT-83     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1109437..1120777
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JLK41_RS05045 (JLK41_05045) - 1110135..1110647 (-) 513 WP_210390490.1 pilus assembly PilX family protein -
  JLK41_RS05050 (JLK41_05050) - 1110644..1111513 (-) 870 WP_210390491.1 PilW family protein -
  JLK41_RS05055 (JLK41_05055) pilV 1111523..1112041 (-) 519 WP_280527694.1 type IV pilus modification protein PilV -
  JLK41_RS05060 (JLK41_05060) - 1112055..1112534 (-) 480 WP_210391191.1 GspH/FimT family pseudopilin -
  JLK41_RS05065 (JLK41_05065) - 1112703..1113194 (-) 492 WP_210391192.1 GspH/FimT family protein -
  JLK41_RS05070 (JLK41_05070) thiO 1113303..1114400 (+) 1098 WP_210390492.1 glycine oxidase ThiO -
  JLK41_RS05075 (JLK41_05075) pilR 1114437..1115777 (-) 1341 WP_134678120.1 sigma-54-dependent transcriptional regulator Regulator
  JLK41_RS05080 (JLK41_05080) pilS 1115780..1117354 (-) 1575 WP_210390493.1 sensor histidine kinase Regulator
  JLK41_RS05085 (JLK41_05085) - 1117362..1117598 (-) 237 WP_047590238.1 PP0621 family protein -
  JLK41_RS05090 (JLK41_05090) - 1117737..1118729 (-) 993 WP_134678118.1 outer membrane protein assembly factor BamD -
  JLK41_RS05095 (JLK41_05095) rluD 1119002..1119976 (+) 975 WP_047590232.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  JLK41_RS05100 (JLK41_05100) pgeF 1119973..1120704 (+) 732 WP_152487974.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 49866.29 Da        Isoelectric Point: 5.6210

>NTDB_id=529243 JLK41_RS05075 WP_134678120.1 1114437..1115777(-) (pilR) [Pseudomonas khazarica strain ODT-83]
MTRQRALIVDDEPDIRELLEITLGRMKLDTRSARNVKEAREWLAREPFDLCLTDMRLPDGTGLDLVQHIQQRHPQVPVAM
ITAYGSLDTAINALKAGAFDFVTKPVDLARLRELVAAALRIRSPEGDEAPVDSRLLGDSPPMKSLRKQIQKLSRSQAPVY
ISGESGSGKELVARLIHEQGPRMEHPFVPVNCGAIPSELMESEFFGHKKGSFTGAIEDKQGLFQAANGGTLFLDEVADLP
LPMQVKLLRAIQEKAVRAVGGQQEVVVDVRILCATHKDLAAEVAAGRFRQDLYYRLNVIELRVPSLRERREDIAQLAEVM
LARLAEGSGLAAAKLQPDALEKLKNYRFPGNVRELENMLERAYTLCEDDQIRPSDLRLADASAPTGEVGEACLAQIDNLE
DYLEEIERKLIMQALEETRWNRTAAAERLGLTFRSMRYRLKKLGID

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=529243 JLK41_RS05075 WP_134678120.1 1114437..1115777(-) (pilR) [Pseudomonas khazarica strain ODT-83]
ATGACCCGCCAGAGAGCCCTAATCGTCGACGACGAACCCGATATCCGCGAACTGCTGGAAATCACCCTCGGACGGATGAA
GCTGGACACCCGTAGCGCGCGCAACGTCAAGGAGGCGCGCGAGTGGCTGGCACGCGAGCCCTTCGACCTGTGCCTCACCG
ACATGCGCCTGCCGGACGGCACCGGCCTCGATCTGGTGCAGCACATCCAGCAGCGCCACCCGCAGGTACCGGTGGCGATG
ATCACCGCCTACGGCAGCCTGGACACGGCGATCAACGCCCTCAAGGCCGGCGCCTTCGACTTCGTCACCAAACCGGTCGA
CCTCGCCCGCCTGCGCGAGCTGGTCGCCGCCGCGCTGCGCATCCGCTCCCCGGAAGGTGACGAGGCGCCGGTCGACAGCC
GCCTGCTGGGCGACTCGCCACCGATGAAGTCGCTACGCAAACAGATTCAGAAACTCTCGCGCAGCCAGGCGCCGGTTTAT
ATCAGTGGCGAATCCGGCAGCGGCAAGGAGCTTGTCGCGCGCCTGATCCATGAACAGGGGCCGCGCATGGAGCACCCCTT
CGTGCCGGTCAACTGCGGCGCGATCCCCTCGGAGCTGATGGAAAGCGAATTCTTCGGCCACAAGAAAGGCAGCTTCACCG
GCGCCATCGAAGACAAACAGGGCCTGTTCCAGGCGGCCAATGGCGGCACGCTGTTCCTCGATGAAGTGGCGGACCTGCCG
CTGCCGATGCAGGTCAAGCTGCTGCGCGCGATTCAGGAAAAGGCCGTGCGCGCGGTCGGCGGTCAGCAGGAAGTGGTGGT
CGACGTACGCATCCTCTGCGCCACCCACAAGGACCTGGCCGCCGAAGTCGCCGCCGGGCGCTTCCGCCAGGATCTCTACT
ACCGTCTCAACGTCATCGAGCTGCGCGTGCCGTCCCTGCGCGAGCGCCGCGAGGATATCGCACAGCTGGCCGAGGTCATG
CTCGCGCGCCTGGCGGAGGGCTCCGGCCTGGCCGCGGCCAAGCTGCAACCCGACGCGCTGGAGAAGCTCAAGAACTATCG
CTTTCCCGGTAACGTGCGCGAACTGGAGAACATGCTCGAGCGCGCCTACACACTGTGCGAAGACGACCAGATCAGGCCGT
CTGACCTGCGCCTGGCCGACGCCAGCGCCCCCACTGGCGAAGTCGGCGAGGCCTGCCTGGCGCAGATCGACAACCTCGAG
GACTACCTCGAGGAAATCGAGCGCAAGCTGATCATGCAGGCCCTGGAGGAAACCCGCTGGAACCGTACGGCAGCGGCGGA
ACGCCTGGGCCTGACCTTCCGCTCGATGCGCTACCGCCTGAAGAAGCTGGGTATCGACTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(136-301)

Bacterial regulatory protein, Fis family (HTH_8)

(403-443)

Response regulator receiver domain (Response_reg)

(7-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

87.444

100

0.874
  pilR Acinetobacter baumannii strain A118

49.783

100

0.513