Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   JLK41_RS05080 Genome accession   NZ_CP068551
Coordinates   1115780..1117354 (-) Length   524 a.a.
NCBI ID   WP_210390493.1    Uniprot ID   -
Organism   Pseudomonas khazarica strain ODT-83     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1110780..1122354
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JLK41_RS05055 (JLK41_05055) pilV 1111523..1112041 (-) 519 WP_280527694.1 type IV pilus modification protein PilV -
  JLK41_RS05060 (JLK41_05060) - 1112055..1112534 (-) 480 WP_210391191.1 GspH/FimT family pseudopilin -
  JLK41_RS05065 (JLK41_05065) - 1112703..1113194 (-) 492 WP_210391192.1 GspH/FimT family protein -
  JLK41_RS05070 (JLK41_05070) thiO 1113303..1114400 (+) 1098 WP_210390492.1 glycine oxidase ThiO -
  JLK41_RS05075 (JLK41_05075) pilR 1114437..1115777 (-) 1341 WP_134678120.1 sigma-54-dependent transcriptional regulator Regulator
  JLK41_RS05080 (JLK41_05080) pilS 1115780..1117354 (-) 1575 WP_210390493.1 sensor histidine kinase Regulator
  JLK41_RS05085 (JLK41_05085) - 1117362..1117598 (-) 237 WP_047590238.1 PP0621 family protein -
  JLK41_RS05090 (JLK41_05090) - 1117737..1118729 (-) 993 WP_134678118.1 outer membrane protein assembly factor BamD -
  JLK41_RS05095 (JLK41_05095) rluD 1119002..1119976 (+) 975 WP_047590232.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  JLK41_RS05100 (JLK41_05100) pgeF 1119973..1120704 (+) 732 WP_152487974.1 peptidoglycan editing factor PgeF -
  JLK41_RS05105 (JLK41_05105) - 1121001..1121591 (+) 591 WP_231499282.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 524 a.a.        Molecular weight: 58387.44 Da        Isoelectric Point: 8.4797

>NTDB_id=529244 JLK41_RS05080 WP_210390493.1 1115780..1117354(-) (pilS) [Pseudomonas khazarica strain ODT-83]
MQDGAQGRRILRLYHFYRLIIGLVLVLLISSNLDEQLLDVVHIGLFRTGSWVYLILNIFIAVLVQRPKHLAQLFSLALVD
VILLSALFYAAGGTPSGIGNLLVVAVAIANILLRGRIGLLIAAVAAIALIYLTFYLSLSRPAAVAQYVQAGALGALCFAG
ALFIQGITRRLQLSETLAEQRAADVANLEELNEQIIQRMRTGILVLDTQHRVLLANQGATQLLGRGELSGKIIDPHCPEL
LKRLQQWLHNPSMRPDSLQAQVDGPVLQPSFISLQRGEQQHTLVFLDDISQIAQQAQQLKLASLGRLTAGIAHEIRNPLG
AISHAAQLLQESEDLQGPDQRLAQIIQDHSKRMNLVIENVLQLSRRRQAEPQLLDLKYWLHRFASEFRSSAPSDRQIHLE
TRGGSLQTRMDPHQLTQVLTNLVQNGLRYSAQQHRLGQVWLQLFRDEKSDLPVLEVLDDGPGVSAEQEQHIFEPFFTTEN
KGTGLGLYISRELCQSNQARLDYKPREGGGSCFRITFAHPRKLS

Nucleotide


Download         Length: 1575 bp        

>NTDB_id=529244 JLK41_RS05080 WP_210390493.1 1115780..1117354(-) (pilS) [Pseudomonas khazarica strain ODT-83]
ATGCAGGATGGAGCCCAGGGGCGACGCATCCTCCGGCTCTATCATTTCTATCGCCTGATCATCGGCTTGGTGCTGGTGCT
GCTGATCTCCAGCAATCTCGACGAACAACTGCTGGATGTCGTGCACATCGGCCTGTTTCGCACCGGCAGCTGGGTCTACC
TGATCCTGAACATCTTCATCGCGGTGCTGGTGCAAAGACCCAAGCACCTGGCGCAGCTGTTCAGCCTGGCCCTGGTCGAC
GTGATCCTTCTCTCCGCGCTGTTCTATGCGGCCGGGGGCACCCCAAGCGGCATCGGCAACCTGCTGGTGGTCGCGGTGGC
AATCGCCAACATCCTGCTGCGCGGGCGCATCGGCCTGCTGATCGCCGCCGTCGCCGCCATCGCGCTGATCTACCTGACCT
TCTACCTGAGCCTCAGCCGACCCGCTGCCGTCGCCCAGTATGTCCAGGCTGGCGCACTGGGTGCGTTGTGCTTCGCTGGC
GCACTCTTCATCCAGGGCATCACCCGTCGCCTGCAGTTGAGCGAGACCCTCGCCGAGCAGCGCGCAGCCGACGTGGCCAA
TCTGGAGGAGCTCAACGAGCAGATCATCCAGCGCATGCGCACCGGCATCCTGGTCCTGGACACCCAGCACCGGGTGCTGC
TGGCCAACCAGGGCGCGACGCAGTTGCTCGGACGTGGCGAACTCAGCGGCAAGATCATCGATCCGCACTGCCCCGAACTG
CTCAAGCGCCTGCAGCAGTGGCTGCACAACCCGAGCATGCGCCCGGACAGCCTGCAGGCGCAGGTCGACGGCCCGGTGCT
GCAGCCCAGCTTCATCTCCCTGCAGCGCGGTGAGCAGCAGCACACCCTGGTGTTTCTCGACGATATTTCGCAAATCGCCC
AGCAGGCGCAGCAGCTCAAGCTGGCCTCGCTCGGCCGCCTGACGGCGGGCATCGCCCACGAAATACGCAACCCGCTCGGC
GCCATCAGCCACGCCGCGCAGTTGCTGCAGGAGTCGGAAGACCTGCAAGGCCCGGATCAGCGTCTGGCGCAGATCATCCA
GGATCATTCCAAGCGCATGAACCTGGTGATCGAGAACGTGCTGCAACTGTCGCGCCGGCGCCAGGCCGAACCGCAGCTGC
TCGACCTGAAGTACTGGCTGCACCGCTTCGCCAGCGAGTTCCGCAGCTCGGCGCCAAGCGACCGACAGATCCACCTGGAG
ACCCGGGGCGGCAGCCTGCAGACGCGCATGGACCCTCACCAGCTGACCCAGGTACTGACCAATCTGGTGCAGAACGGCCT
GCGCTATAGTGCTCAGCAGCACCGCCTCGGCCAGGTCTGGCTGCAGCTGTTCCGCGACGAGAAGAGCGACCTGCCGGTGC
TCGAAGTGCTCGACGATGGCCCCGGCGTCTCTGCGGAGCAGGAGCAGCACATCTTCGAGCCGTTCTTCACCACCGAGAAC
AAGGGAACCGGGCTTGGCCTGTATATTTCCCGTGAACTGTGCCAGAGCAATCAGGCCCGCCTCGACTACAAACCTCGCGA
GGGTGGCGGCAGCTGCTTCCGCATCACCTTCGCCCACCCGCGCAAACTGAGCTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(411-517)

His Kinase A (phospho-acceptor) domain (HisKA)

(303-367)

PAS domain (PAS_8)

(193-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

67.823

99.046

0.672