Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   K8B91_RS18190 Genome accession   NZ_CP082777
Coordinates   3799307..3800044 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli O25:H1 strain CU39ES-1     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3794307..3805044
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8B91_RS18175 (K8B91_18090) clpC 3794761..3797334 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  K8B91_RS18180 (K8B91_18095) yfiH 3797464..3798195 (-) 732 WP_000040136.1 purine nucleoside phosphorylase YfiH -
  K8B91_RS18185 (K8B91_18100) rluD 3798192..3799172 (-) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  K8B91_RS18190 (K8B91_18105) comL 3799307..3800044 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  K8B91_RS18195 (K8B91_18110) raiA 3800314..3800655 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  K8B91_RS18200 (K8B91_18115) pheL 3800759..3800806 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  K8B91_RS18205 (K8B91_18120) pheA 3800905..3802065 (+) 1161 WP_000200106.1 bifunctional chorismate mutase/prephenate dehydratase -
  K8B91_RS18210 (K8B91_18125) tyrA 3802108..3803229 (-) 1122 WP_000225230.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  K8B91_RS18215 (K8B91_18130) aroF 3803240..3804310 (-) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  K8B91_RS18220 (K8B91_18135) yfiL 3804520..3804885 (+) 366 WP_001298694.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=529054 K8B91_RS18190 WP_000197686.1 3799307..3800044(+) (comL) [Escherichia coli O25:H1 strain CU39ES-1]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=529054 K8B91_RS18190 WP_000197686.1 3799307..3800044(+) (comL) [Escherichia coli O25:H1 strain CU39ES-1]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTATCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376