Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   JKL50_RS16820 Genome accession   NZ_CP068389
Coordinates   3276872..3277513 (+) Length   213 a.a.
NCBI ID   WP_007500477.1    Uniprot ID   -
Organism   Bacillus altitudinis strain ws31     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3271872..3282513
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JKL50_RS16795 (JKL50_16795) - 3272206..3272559 (-) 354 WP_019744042.1 hypothetical protein -
  JKL50_RS16800 (JKL50_16800) degQ 3273065..3273205 (+) 141 WP_003213123.1 degradation enzyme regulation protein DegQ Regulator
  JKL50_RS16805 (JKL50_16805) - 3273357..3274271 (+) 915 WP_202734256.1 polyprenyl synthetase family protein -
  JKL50_RS16810 (JKL50_16810) comX 3274268..3274438 (+) 171 WP_074041927.1 competence pheromone ComX -
  JKL50_RS16815 (JKL50_16815) comP 3274479..3276791 (+) 2313 WP_035701206.1 ATP-binding protein Regulator
  JKL50_RS16820 (JKL50_16820) comA 3276872..3277513 (+) 642 WP_007500477.1 response regulator transcription factor Regulator
  JKL50_RS16825 (JKL50_16825) - 3277537..3277926 (+) 390 WP_008345855.1 hotdog fold thioesterase -
  JKL50_RS16830 (JKL50_16830) mnhG 3278017..3278391 (-) 375 WP_003213369.1 monovalent cation/H(+) antiporter subunit G -
  JKL50_RS16835 (JKL50_16835) - 3278375..3278656 (-) 282 WP_035389259.1 Na(+)/H(+) antiporter subunit F1 -
  JKL50_RS16840 (JKL50_16840) - 3278656..3279135 (-) 480 WP_008345848.1 Na+/H+ antiporter subunit E -
  JKL50_RS16845 (JKL50_16845) - 3279142..3280620 (-) 1479 WP_019744043.1 Na+/H+ antiporter subunit D -
  JKL50_RS16850 (JKL50_16850) - 3280613..3280954 (-) 342 WP_008345845.1 Na(+)/H(+) antiporter subunit C -
  JKL50_RS16855 (JKL50_16855) - 3280954..3281385 (-) 432 WP_008345843.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24140.53 Da        Isoelectric Point: 4.5688

>NTDB_id=528858 JKL50_RS16820 WP_007500477.1 3276872..3277513(+) (comA) [Bacillus altitudinis strain ws31]
MKKILVIDDHPAVMEGTKSILESDQQLSVDCLSPDAEGAFLKTHDFSIYDVILMDLNLGDINGMDIAKQILETNQQVKII
IYTGYEVDDYFEEAIRAGLHGAISKTETKDKIIEYIHRTLQGEVVIQLSYLKKLISQQQEKPEQAQQTDHELLTERECLI
LREVEKGYTNQEIADVLHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSESVL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=528858 JKL50_RS16820 WP_007500477.1 3276872..3277513(+) (comA) [Bacillus altitudinis strain ws31]
ATGAAGAAGATATTGGTCATTGATGATCATCCGGCTGTCATGGAAGGGACAAAAAGCATATTAGAATCAGATCAGCAGCT
ATCAGTCGATTGTTTAAGTCCTGATGCAGAAGGCGCCTTTTTAAAGACGCATGACTTTTCCATCTATGATGTGATCTTGA
TGGATTTAAATCTCGGGGATATCAATGGAATGGACATTGCCAAACAAATTCTAGAAACGAATCAACAAGTGAAAATTATC
ATTTATACAGGATATGAAGTAGATGATTATTTCGAAGAGGCCATTCGAGCTGGATTGCATGGTGCAATAAGTAAAACAGA
GACAAAAGACAAAATTATTGAATACATACACCGCACATTGCAAGGAGAAGTTGTCATTCAGCTATCCTATTTAAAGAAAT
TAATTTCACAGCAGCAAGAGAAGCCAGAACAGGCGCAGCAGACGGATCATGAGCTGTTAACAGAGCGTGAATGCTTAATC
TTAAGAGAAGTGGAAAAAGGGTACACAAACCAAGAGATCGCCGATGTGCTTCATTTGAGCAAACGCTCGATTGAATACAG
TTTGACCTCCATCTTTAATAAGCTGAATGTTGGATCTCGAACAGAAGCGGTGTTAATTGCAAAATCGGAAAGTGTCCTGT
AA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-207)

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

71.495

100

0.718