Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   JKL50_RS15090 Genome accession   NZ_CP068389
Coordinates   2933525..2934904 (+) Length   459 a.a.
NCBI ID   WP_142759403.1    Uniprot ID   -
Organism   Bacillus altitudinis strain ws31     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2928525..2939904
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JKL50_RS15070 (JKL50_15070) - 2929532..2930200 (-) 669 WP_017357860.1 YigZ family protein -
  JKL50_RS15075 (JKL50_15075) degS 2930422..2931597 (+) 1176 WP_202734188.1 sensor histidine kinase Regulator
  JKL50_RS15080 (JKL50_15080) degU 2931662..2932351 (+) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  JKL50_RS15085 (JKL50_15085) - 2932563..2933405 (+) 843 WP_024719242.1 DegV family protein -
  JKL50_RS15090 (JKL50_15090) comFA 2933525..2934904 (+) 1380 WP_142759403.1 DEAD/DEAH box helicase Machinery gene
  JKL50_RS15095 (JKL50_15095) - 2934969..2935262 (+) 294 WP_035701582.1 late competence development ComFB family protein -
  JKL50_RS15100 (JKL50_15100) - 2935223..2935945 (+) 723 WP_390308590.1 ComF family protein -
  JKL50_RS15105 (JKL50_15105) - 2936002..2936421 (+) 420 WP_017357864.1 TIGR03826 family flagellar region protein -
  JKL50_RS15110 (JKL50_15110) flgM 2936501..2936764 (+) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  JKL50_RS15115 (JKL50_15115) - 2936783..2937265 (+) 483 WP_007499977.1 flagellar protein FlgN -
  JKL50_RS15120 (JKL50_15120) flgK 2937281..2938801 (+) 1521 WP_017368142.1 flagellar hook-associated protein FlgK -
  JKL50_RS15125 (JKL50_15125) flgL 2938810..2939721 (+) 912 WP_017368141.1 flagellar hook-associated protein FlgL -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 52572.18 Da        Isoelectric Point: 9.9737

>NTDB_id=528852 JKL50_RS15090 WP_142759403.1 2933525..2934904(+) (comFA) [Bacillus altitudinis strain ws31]
MNLEKAMELSHKLQSRHLLPVECQCTQSELEWLENQGFIHRTPAVDRVASGLICCRCGVSNKRYFALSPCETCKKECVYC
RSCIMLGKVSECGFLYEWTGPQKKETRQVELTWQGELSKGQKRASDRLVEAIQNKFDLLVWAVCGAGKTEVLFHGIKYAL
NNGMSVCIATPRTDVVLELEPRMRKAFQGLNIAALYGGSSQRFQMAPLMIATTHQLMRYKNAFDVLVVDEVDAFPYSMDE
RLQFAVLKSMKKTGVRIYLSATPSKKMQKDVARRQLEAIKIPLRFHQKPLPVPTFQWVGDWKKRLKRNRLPASTMNWLHE
HITKKKRVLLFVPSISTMKKVTHILQVQDVNVQGVSADDQERKQKVQHFRDHRYDVLVTTTILERGVTIQDVQVGVLGAE
SPIFTESALVQISGRTGRHPDFFNGDVYFFHFGLTRSMKQAKKHIVKMNNSAEKEFSEK

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=528852 JKL50_RS15090 WP_142759403.1 2933525..2934904(+) (comFA) [Bacillus altitudinis strain ws31]
TTGAATCTGGAAAAAGCAATGGAACTCAGTCACAAGCTACAATCAAGGCACCTTCTTCCTGTTGAATGTCAATGTACACA
GTCCGAATTGGAGTGGCTGGAGAATCAAGGATTTATCCATAGAACACCTGCTGTCGATAGGGTGGCGAGTGGTTTGATCT
GCTGCCGGTGCGGTGTATCAAACAAGCGCTACTTTGCCCTCTCTCCGTGTGAAACATGTAAAAAAGAATGTGTATACTGT
AGATCCTGCATCATGCTGGGAAAAGTAAGTGAATGTGGCTTTCTCTACGAATGGACGGGTCCACAAAAGAAAGAAACAAG
ACAAGTTGAATTAACATGGCAGGGAGAGCTTTCTAAAGGGCAAAAGAGAGCGTCCGATAGGCTAGTAGAAGCAATCCAAA
ACAAATTTGATCTGCTCGTTTGGGCTGTTTGTGGTGCGGGGAAAACGGAGGTGCTTTTTCACGGAATAAAATATGCGTTA
AATAACGGAATGAGTGTTTGTATTGCGACGCCTAGAACCGATGTTGTACTTGAGCTTGAACCTCGAATGAGAAAGGCATT
TCAAGGACTGAATATAGCTGCACTTTATGGCGGGAGTTCTCAAAGATTTCAAATGGCACCGCTTATGATCGCTACAACCC
ATCAGCTAATGAGATATAAAAACGCTTTTGATGTCCTCGTTGTAGACGAAGTCGATGCTTTTCCTTATTCAATGGATGAA
CGGCTTCAGTTTGCTGTTTTAAAATCAATGAAAAAAACAGGAGTTAGAATTTACTTAAGTGCCACACCATCTAAAAAAAT
GCAAAAGGATGTTGCTCGTAGACAATTAGAAGCGATCAAAATTCCTCTGCGCTTCCACCAAAAACCGTTGCCTGTCCCAA
CATTTCAATGGGTTGGAGATTGGAAAAAGAGATTAAAAAGAAATCGGCTTCCAGCATCTACAATGAACTGGCTGCATGAA
CATATCACAAAGAAAAAAAGAGTGTTACTCTTTGTTCCTTCTATTTCTACTATGAAGAAGGTAACTCATATTCTTCAAGT
TCAGGATGTAAATGTACAGGGTGTTTCTGCGGATGATCAAGAAAGGAAGCAAAAAGTCCAGCATTTCAGAGATCATAGGT
ACGATGTATTGGTTACAACAACTATTCTAGAAAGAGGCGTTACCATTCAAGATGTTCAAGTGGGCGTATTAGGTGCGGAA
TCTCCTATTTTTACAGAAAGTGCACTTGTCCAAATTTCTGGTAGAACAGGGAGACATCCAGATTTTTTTAACGGAGACGT
GTACTTTTTTCATTTTGGTTTAACGAGAAGTATGAAACAAGCAAAGAAACATATCGTAAAAATGAATAATTCAGCTGAAA
AAGAGTTTTCTGAAAAATAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(116-264)

Helicase conserved C-terminal domain (Helicase_C)

(320-419)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

51.902

97.386

0.505