Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   JKL50_RS15080 Genome accession   NZ_CP068389
Coordinates   2931662..2932351 (+) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus altitudinis strain ws31     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2926662..2937351
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JKL50_RS15060 (JKL50_15060) - 2927352..2928419 (+) 1068 WP_007499956.1 glycosyltransferase family 4 protein -
  JKL50_RS15065 (JKL50_15065) - 2928456..2929547 (-) 1092 WP_025208065.1 LCP family protein -
  JKL50_RS15070 (JKL50_15070) - 2929532..2930200 (-) 669 WP_017357860.1 YigZ family protein -
  JKL50_RS15075 (JKL50_15075) degS 2930422..2931597 (+) 1176 WP_202734188.1 sensor histidine kinase Regulator
  JKL50_RS15080 (JKL50_15080) degU 2931662..2932351 (+) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  JKL50_RS15085 (JKL50_15085) - 2932563..2933405 (+) 843 WP_024719242.1 DegV family protein -
  JKL50_RS15090 (JKL50_15090) comFA 2933525..2934904 (+) 1380 WP_142759403.1 DEAD/DEAH box helicase Machinery gene
  JKL50_RS15095 (JKL50_15095) - 2934969..2935262 (+) 294 WP_035701582.1 late competence development ComFB family protein -
  JKL50_RS15100 (JKL50_15100) - 2935223..2935945 (+) 723 WP_390308590.1 ComF family protein -
  JKL50_RS15105 (JKL50_15105) - 2936002..2936421 (+) 420 WP_017357864.1 TIGR03826 family flagellar region protein -
  JKL50_RS15110 (JKL50_15110) flgM 2936501..2936764 (+) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  JKL50_RS15115 (JKL50_15115) - 2936783..2937265 (+) 483 WP_007499977.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=528851 JKL50_RS15080 WP_008348273.1 2931662..2932351(+) (degU) [Bacillus altitudinis strain ws31]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=528851 JKL50_RS15080 WP_008348273.1 2931662..2932351(+) (degU) [Bacillus altitudinis strain ws31]
GTGACTAAAGTAAATATTGTAATTATCGATGACCACCAATTATTCCGTGAAGGTGTCAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGTGACGAAGCTGCACGTATCGTAGAACACTATCATCCGGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTGGAGGCTACAAAACAGCTAGTAGAGCTTTATCCCGAATCAAAAGTC
ATTATCCTATCTATTCATGACGATGAAAACTATGTGACACATGCATTAAAAACAGGAGCAAGAGGCTACTTGTTAAAAGA
AATGGATGCAGATACCCTCATTGAAGCAGTAAAAGTAGTAGCTGACGGAGGCTCTTATTTACATCCGAAAGTCACTCATA
ACTTAGTAAATGAATTCCGACGCTTAGCAACAAGCGGCGTTTCAGCACATCCACAGCACGAGGTATATCCTGAAATTCGC
AGACCACTTCATATCTTAACAAGACGTGAATGTGAAGTTCTTCAAATGTTAGCTGACGGAAAGAGCAATAGAGGTATTGG
TGAGTCGCTCTTTATTAGTGAGAAAACAGTCAAAAACCACGTGAGTAACATTTTGCAAAAAATGAATGTAAATGACCGTA
CTCAAGCTGTTGTTGTAGCAATTAAAAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996