Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   ABCA12_RS12565 Genome accession   NZ_CP068253
Coordinates   2632527..2632910 (-) Length   127 a.a.
NCBI ID   WP_004640629.1    Uniprot ID   -
Organism   Acinetobacter junii strain CAM121     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2627527..2637910
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABCA12_RS12550 (ABCA12_2578) - 2629435..2631522 (-) 2088 WP_201897725.1 methyl-accepting chemotaxis protein -
  ABCA12_RS12555 (ABCA12_2579) - 2631569..2632105 (-) 537 WP_004908738.1 chemotaxis protein CheW -
  ABCA12_RS12560 (ABCA12_2580) - 2632144..2632506 (-) 363 WP_004664659.1 response regulator -
  ABCA12_RS12565 (ABCA12_2581) pilG 2632527..2632910 (-) 384 WP_004640629.1 twitching motility response regulator PilG Regulator
  ABCA12_RS12570 (ABCA12_2582) - 2633190..2633858 (+) 669 WP_112986176.1 hypothetical protein -
  ABCA12_RS12575 (ABCA12_2583) - 2634017..2635732 (+) 1716 WP_112986177.1 proline--tRNA ligase -
  ABCA12_RS12580 (ABCA12_2584) - 2635793..2636128 (-) 336 WP_042893173.1 YegP family protein -
  ABCA12_RS12585 (ABCA12_2585) - 2636270..2636614 (-) 345 WP_042893177.1 zinc ribbon domain-containing protein YjdM -
  ABCA12_RS12590 (ABCA12_2586) - 2636697..2637047 (-) 351 WP_004950548.1 DUF488 domain-containing protein -
  ABCA12_RS12595 (ABCA12_2587) - 2637072..2637407 (-) 336 WP_201897726.1 DUF2004 domain-containing protein -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14199.33 Da        Isoelectric Point: 4.7278

>NTDB_id=528636 ABCA12_RS12565 WP_004640629.1 2632527..2632910(-) (pilG) [Acinetobacter junii strain CAM121]
MEDKFQNLKVMVIDDSKTIRRTAETLLQREGCEVITAVDGFEALSKIAEANPDIVFVDIMMPRLDGYQTCALIKNSLNYQ
NIPVIMLSSKDGLFDQAKGRVVGSDEYLTKPFSKDELLSAIRNHVSA

Nucleotide


Download         Length: 384 bp        

>NTDB_id=528636 ABCA12_RS12565 WP_004640629.1 2632527..2632910(-) (pilG) [Acinetobacter junii strain CAM121]
ATGGAAGATAAATTTCAAAATTTAAAAGTAATGGTGATTGACGATTCTAAAACGATTCGACGTACAGCTGAGACACTGTT
ACAACGCGAAGGTTGTGAGGTGATTACAGCTGTCGATGGTTTTGAAGCATTATCGAAAATTGCGGAAGCAAATCCTGATA
TCGTATTTGTCGATATTATGATGCCACGTCTAGATGGTTACCAAACCTGTGCATTAATTAAAAACTCTCTAAATTATCAA
AATATTCCAGTAATCATGTTATCAAGCAAAGATGGTTTGTTTGATCAAGCCAAAGGGCGTGTTGTGGGGTCAGATGAATA
TTTAACTAAGCCATTTAGTAAAGATGAGCTGTTAAGTGCGATTCGTAACCACGTAAGCGCATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

96.85

100

0.969
  vicR Streptococcus mutans UA159

42.735

92.126

0.394
  pilH Synechocystis sp. PCC 6803

41.228

89.764

0.37