Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   ABCA12_RS06615 Genome accession   NZ_CP068253
Coordinates   1368502..1369209 (-) Length   235 a.a.
NCBI ID   WP_004915082.1    Uniprot ID   A0A8I0S549
Organism   Acinetobacter junii strain CAM121     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1363502..1374209
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABCA12_RS06600 (ABCA12_1332) - 1364158..1365732 (+) 1575 WP_151975034.1 urea amidolyase family protein -
  ABCA12_RS06605 (ABCA12_1333) - 1365733..1367466 (+) 1734 WP_075696396.1 acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha -
  ABCA12_RS06610 (ABCA12_1334) - 1367519..1368298 (-) 780 WP_004915079.1 M48 family metallopeptidase -
  ABCA12_RS06615 (ABCA12_1335) crp 1368502..1369209 (-) 708 WP_004915082.1 cAMP-activated global transcriptional regulator CRP Regulator
  ABCA12_RS06620 (ABCA12_1336) - 1369357..1369785 (+) 429 WP_004953612.1 OsmC family protein -
  ABCA12_RS06625 (ABCA12_1337) - 1369831..1370631 (-) 801 Protein_1285 peptidoglycan DD-metalloendopeptidase family protein -
  ABCA12_RS06630 (ABCA12_1338) clpB 1370893..1373472 (+) 2580 WP_004915091.1 ATP-dependent chaperone ClpB -
  ABCA12_RS06635 (ABCA12_1339) - 1373637..1374059 (+) 423 WP_151817019.1 hypothetical protein -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26613.24 Da        Isoelectric Point: 4.7528

>NTDB_id=528634 ABCA12_RS06615 WP_004915082.1 1368502..1369209(-) (crp) [Acinetobacter junii strain CAM121]
MTSNFSQLSTDALSPGQLPESVKALLKRAHINRYPKRTTIVDAGTESKSLYLILKGSVSIILREDDEREIVVAYLNPGDF
FGEMGLFEKNPQRTAEVRTRDVCEIAEISYDNFHELSKQYPDLSYAVFAQLVRRLKNTTRKVTDLAFIDVSGRIARCLID
LSSQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEDQGMIQTDGKAILIFDTSLEENAFTEEEFDDEE

Nucleotide


Download         Length: 708 bp        

>NTDB_id=528634 ABCA12_RS06615 WP_004915082.1 1368502..1369209(-) (crp) [Acinetobacter junii strain CAM121]
ATGACTTCAAATTTTTCACAGCTTAGCACTGATGCTTTATCACCAGGTCAATTACCTGAATCTGTTAAAGCCTTGCTAAA
ACGTGCTCATATTAACAGATACCCTAAACGCACCACGATTGTTGACGCTGGAACGGAATCAAAATCACTGTATTTAATAT
TAAAAGGTTCGGTGTCAATTATTTTACGTGAAGATGATGAACGTGAGATTGTCGTTGCATACTTAAACCCTGGGGATTTC
TTTGGCGAAATGGGTCTTTTTGAGAAGAACCCACAACGTACTGCGGAAGTAAGAACTCGTGATGTTTGTGAAATCGCCGA
GATTTCATATGACAACTTCCACGAATTAAGCAAACAATATCCTGATTTGAGCTACGCGGTATTTGCTCAATTAGTTCGCC
GCTTAAAAAATACAACACGTAAAGTAACTGACCTTGCATTTATTGATGTATCTGGTCGTATTGCACGTTGTTTAATTGAT
TTATCTTCGCAACCAGAAGCAATGATCTTACCAAATGGTCGTCAAATCCGTATTACTCGCCAAGAGATTGGTCGTATTGT
CGGTTGTTCACGTGAAATGGTTGGACGTGTTCTTAAGACGCTTGAAGATCAAGGCATGATTCAAACTGATGGTAAAGCAA
TTTTAATTTTTGATACTTCATTAGAAGAAAATGCATTTACTGAAGAAGAGTTTGACGACGAAGAATAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(152-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

96.17

100

0.962
  crp Vibrio cholerae strain A1552

47.826

88.085

0.421
  crp Haemophilus influenzae Rd KW20

49.223

82.128

0.404