Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   JG554_RS04765 Genome accession   NZ_CP068241
Coordinates   1026195..1026824 (+) Length   209 a.a.
NCBI ID   WP_019469616.1    Uniprot ID   A0A6N7XUN7
Organism   Staphylococcus sp. 11-B-312     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1021195..1031824
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JG554_RS04735 (JG554_04735) - 1021232..1021957 (+) 726 WP_064209718.1 glutamine amidotransferase -
  JG554_RS04740 (JG554_04740) - 1022042..1023028 (-) 987 WP_064209717.1 aromatic acid exporter family protein -
  JG554_RS04745 (JG554_04745) map 1023204..1023956 (+) 753 WP_046207955.1 type I methionyl aminopeptidase -
  JG554_RS04750 (JG554_04750) - 1024061..1024447 (+) 387 WP_019469613.1 hypothetical protein -
  JG554_RS04755 (JG554_04755) liaF 1024464..1025165 (+) 702 WP_064209716.1 cell wall-active antibiotics response protein LiaF -
  JG554_RS04760 (JG554_04760) vraS 1025162..1026205 (+) 1044 WP_046207953.1 sensor histidine kinase Regulator
  JG554_RS04765 (JG554_04765) vraR 1026195..1026824 (+) 630 WP_019469616.1 response regulator transcription factor Regulator
  JG554_RS04770 (JG554_04770) - 1026894..1027982 (-) 1089 WP_046207952.1 YihY/virulence factor BrkB family protein -
  JG554_RS04775 (JG554_04775) - 1028286..1028570 (-) 285 WP_203265379.1 YtxH domain-containing protein -
  JG554_RS04780 (JG554_04780) - 1028578..1029042 (-) 465 WP_046207950.1 low molecular weight protein-tyrosine-phosphatase -
  JG554_RS04785 (JG554_04785) - 1029175..1029378 (+) 204 WP_046207949.1 DUF1128 family protein -
  JG554_RS04790 (JG554_04790) - 1029393..1030631 (+) 1239 WP_064209715.1 aminopeptidase -
  JG554_RS04795 (JG554_04795) - 1030786..1031307 (+) 522 WP_046207947.1 acyl-CoA thioesterase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 23774.31 Da        Isoelectric Point: 4.7152

>NTDB_id=528480 JG554_RS04765 WP_019469616.1 1026195..1026824(+) (vraR) [Staphylococcus sp. 11-B-312]
MPIKVLFVDDHEMVRIGISSYLSTQPDIEVVGEGQSGKDAIEKAHELKPDLILMDLLMDDMDGVEATEQIKKDLPHIKVV
MLTSYIEDNEVYRALDSGVDSYILKTTSASDIAEAIRKTYRDESVFEAEVLVKMRNRMKQRAELYEMLTEREMEILLLIA
KGYSNQEIASASHITIKTVKTHVSNVLSKLEVQDRTQAVIYAFQHNLIQ

Nucleotide


Download         Length: 630 bp        

>NTDB_id=528480 JG554_RS04765 WP_019469616.1 1026195..1026824(+) (vraR) [Staphylococcus sp. 11-B-312]
ATGCCGATTAAAGTATTATTTGTTGATGATCATGAAATGGTCAGAATTGGTATTTCTAGTTATTTATCTACTCAACCAGA
TATAGAAGTAGTCGGAGAAGGGCAATCGGGGAAAGATGCAATTGAAAAAGCACATGAACTTAAGCCTGATTTAATTTTAA
TGGACTTACTCATGGATGATATGGATGGTGTAGAAGCTACAGAACAAATCAAGAAAGATTTGCCACACATTAAAGTTGTT
ATGCTAACCAGTTATATTGAAGATAATGAAGTATACCGTGCTTTAGATTCTGGTGTAGATAGTTATATTTTAAAAACGAC
AAGTGCCAGCGATATCGCCGAAGCGATACGTAAAACATATCGTGATGAATCTGTGTTTGAAGCAGAAGTGTTGGTTAAGA
TGAGGAATCGTATGAAACAACGCGCTGAATTATATGAGATGTTAACTGAACGTGAGATGGAGATATTATTATTAATCGCT
AAAGGATACTCAAATCAGGAAATTGCTAGTGCTTCACATATTACAATCAAAACAGTTAAAACACATGTCAGTAACGTGTT
GAGTAAATTAGAAGTACAAGATAGAACTCAAGCTGTAATTTATGCATTTCAACATAATTTAATACAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(147-202)

Response regulator receiver domain (Response_reg)

(5-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6N7XUN7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

90.431

100

0.904
  degU Bacillus subtilis subsp. subtilis str. 168

33.929

100

0.364