NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	JJJ22_RS06915	Genome accession	NZ_CP068232
Coordinates	1401804..1402679 (-)	Length	291 a.a.
NCBI ID	WP_200164281.1	Uniprot ID	-
Organism	Aeromonas caviae isolate Aero19
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1396804..1407679

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JJJ22_RS06890 (JJJ22_06890)	-	1398553..1399737 (+)	1185	WP_200164282.1	tetratricopeptide repeat protein	-
JJJ22_RS06895 (JJJ22_06895)	mutT	1399746..1400150 (+)	405	WP_171864957.1	8-oxo-dGTP diphosphatase MutT	-
JJJ22_RS06900 (JJJ22_06900)	yacG	1400206..1400400 (-)	195	WP_039040499.1	DNA gyrase inhibitor YacG	-
JJJ22_RS06905 (JJJ22_06905)	zapD	1400411..1401133 (-)	723	WP_010675825.1	cell division protein ZapD	-
JJJ22_RS06910 (JJJ22_06910)	coaE	1401171..1401785 (-)	615	WP_109111851.1	dephospho-CoA kinase	-
JJJ22_RS06915 (JJJ22_06915)	pilD	1401804..1402679 (-)	876	WP_200164281.1	prepilin peptidase	Machinery gene
JJJ22_RS06920 (JJJ22_06920)	pilC	1402747..1403988 (-)	1242	WP_200164280.1	type II secretion system F family protein	Machinery gene
JJJ22_RS06925 (JJJ22_06925)	pilB	1404117..1405823 (-)	1707	WP_200164279.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
JJJ22_RS06930 (JJJ22_06930)	-	1405827..1406267 (-)	441	WP_200164278.1	pilin	-
JJJ22_RS06935 (JJJ22_06935)	nadC	1406577..1407464 (-)	888	WP_200164277.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

Download Length: 291 a.a. Molecular weight: 32210.45 Da Isoelectric Point: 7.0270

                                >NTDB_id=528339 JJJ22_RS06915 WP_200164281.1 1401804..1402679(-) (pilD) [Aeromonas caviae isolate Aero19]

MAPLIELAQALPWLYLSLVFLFSLMVGSFLNVVIHRLPIMMERDWHAEYTDYFGEDTSPIPATGRYNLMVPRSRCPHCDH

PIGALENIPLLSWLWLRGRCRNCRAPISARYPLVELLTALLSVAVAATLTPGWGTLAALVLTWVLVALTFIDLDKMLLPD

QLTLPLLWGGLLFNLPGGFVPLVDAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSS

LAGAIIGIGLILLRNHHQGKPIPFGPYLAIAGWITLLWGDSITRWYLDVVL

Nucleotide

Download Length: 876 bp

                                >NTDB_id=528339 JJJ22_RS06915 WP_200164281.1 1401804..1402679(-) (pilD) [Aeromonas caviae isolate Aero19]

ATGGCGCCCCTGATCGAACTGGCCCAGGCCCTGCCCTGGCTTTATCTCTCCCTGGTGTTTCTCTTCTCCCTGATGGTGGG

CAGCTTCCTCAACGTGGTGATCCATCGCCTGCCCATCATGATGGAGCGGGACTGGCACGCCGAATACACCGACTATTTCG

GTGAAGATACATCCCCCATCCCGGCCACAGGACGCTACAACCTGATGGTACCCCGCTCCCGCTGCCCCCATTGCGACCAC

CCCATTGGTGCGCTGGAGAACATCCCCCTGCTGAGCTGGCTCTGGCTCAGGGGGCGCTGCCGCAACTGCCGTGCCCCCAT

CTCCGCCCGCTATCCCCTGGTCGAGTTGCTCACGGCCCTGCTGTCGGTCGCCGTGGCCGCCACCCTCACTCCCGGCTGGG

GAACCCTGGCGGCCCTCGTGCTGACCTGGGTACTGGTGGCGCTCACCTTCATCGATCTGGACAAGATGCTGCTGCCGGAC

CAGCTCACCCTGCCACTGCTGTGGGGCGGCCTGCTGTTCAACCTGCCGGGAGGCTTCGTCCCCCTGGTGGATGCGGTGAT

CGGCGCCATGGCAGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCCTTCAAGCTGCTGACCGGCAAGGAAGGGATGGGCT

ATGGCGACTTCAAACTGCTGGCGGCGCTGGGCGCCTGGCTCGGCTGGCAAGCCTTGCCCATCGTGCTGCTGCTTTCCTCG

CTGGCAGGCGCCATCATCGGCATCGGTCTCATCCTGCTGCGCAATCACCACCAGGGCAAACCCATTCCCTTTGGCCCCTA

TCTCGCCATCGCGGGCTGGATAACGCTGCTGTGGGGCGATAGCATCACCCGCTGGTATCTTGATGTCGTGCTCTAG

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(139-248)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-127)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Vibrio cholerae strain A1552	61.538	98.282	0.605
pilD	Vibrio campbellii strain DS40M4	57.241	99.656	0.57
pilD	Acinetobacter baumannii D1279779	54.122	95.876	0.519
pilD	Acinetobacter nosocomialis M2	54.122	95.876	0.519
pilD	Neisseria gonorrhoeae MS11	50.923	93.127	0.474

Detailed information NTG0528339