Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   K7H19_RS09600 Genome accession   NZ_CP082323
Coordinates   1782987..1784984 (-) Length   665 a.a.
NCBI ID   WP_011228991.1    Uniprot ID   Q56243
Organism   Thermus thermophilus strain N-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1777987..1789984
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K7H19_RS09580 (K7H19_09580) - 1779234..1780112 (+) 879 WP_011228987.1 ABC transporter ATP-binding protein -
  K7H19_RS09585 (K7H19_09585) - 1780105..1780875 (+) 771 WP_011228988.1 ABC transporter permease -
  K7H19_RS09590 (K7H19_09590) - 1780872..1781936 (-) 1065 WP_011228989.1 aminopeptidase -
  K7H19_RS09595 (K7H19_09595) - 1781957..1782979 (+) 1023 WP_011228990.1 E3 binding domain-containing protein -
  K7H19_RS09600 (K7H19_09600) uvrB 1782987..1784984 (-) 1998 WP_011228991.1 excinuclease ABC subunit UvrB Machinery gene
  K7H19_RS09605 (K7H19_09605) - 1785081..1787867 (-) 2787 WP_011228992.1 S-layer homology domain-containing protein -
  K7H19_RS11835 - 1788285..1788470 (-) 186 WP_223966770.1 hypothetical protein -
  K7H19_RS09610 (K7H19_09610) - 1788412..1789059 (+) 648 WP_224065233.1 transposase -

Sequence

Protein


Download         Length: 665 a.a.        Molecular weight: 76160.07 Da        Isoelectric Point: 5.4005

>NTDB_id=528158 K7H19_RS09600 WP_011228991.1 1782987..1784984(-) (uvrB) [Thermus thermophilus strain N-1]
MTFRYRGPSPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMAKVIEALGRPALVLAPNKILAAQLAAEFRELFPE
NAVEYFISYYDYYQPEAYVPGKDLYIEKDASINPEIERLRHSTTRSLLTRRDVIVVASVSAIYGLGDPREYRARNLVVER
GKPYPREVLLERLLELGYQRNDIDLSPGRFRAKGEVLEIFPAYETEPIRVELFGDEVERISQVHPVTGERLRELPGFVLF
PATHYLSPEGLEEILKEIEKELWERVRYFEERGEVLYAQRLKERTLYDLEMLRVMGTCPGVENYARYFTGKAPGEPPYTL
LDYFPEDFLVFLDESHVTVPQLQGMYRGDYARKKTLVDYGFRLPSALDNRPLRFEEFLERVSQVVFVSATPGPFELAHSG
RVVEQIIRPTGLLDPLVRVKPTENQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFERQ
ALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNARGEVWLYADRVSEAMQRAIE
ETNRRRALQEAYNLEHGITPETVRKEVRAVIRPEGYEEAPLEADLSGEDLRERIAELELAMWQAAEALDFERAARLRDEI
RALEARLQGVRAPEPVPGGRKRKRR

Nucleotide


Download         Length: 1998 bp        

>NTDB_id=528158 K7H19_RS09600 WP_011228991.1 1782987..1784984(-) (uvrB) [Thermus thermophilus strain N-1]
ATGACCTTCCGCTACCGGGGGCCAAGCCCCAAGGGGGACCAGCCCAAGGCCATCGCCGGGCTCGTGGAGGCCTTGAGGGA
CGGGGAGCGCTTCGTCACCCTCCTCGGGGCCACGGGCACGGGGAAGACGGTGACCATGGCCAAGGTCATTGAGGCCCTGG
GAAGGCCCGCTTTGGTCCTCGCCCCCAACAAGATCCTCGCGGCCCAGCTTGCGGCGGAGTTTAGGGAGCTCTTCCCGGAA
AACGCTGTAGAGTACTTCATCAGCTACTACGACTACTACCAGCCCGAGGCCTACGTCCCGGGGAAGGACCTCTACATAGA
GAAGGACGCCTCCATCAACCCCGAGATTGAGCGCTTAAGGCACTCCACCACCCGAAGCCTCCTCACGCGGCGGGACGTGA
TCGTGGTGGCCTCGGTCTCGGCCATCTACGGCCTCGGGGACCCGAGGGAGTACAGGGCCAGGAACCTGGTGGTGGAAAGG
GGCAAGCCCTACCCCAGGGAGGTCCTTTTGGAGCGCCTCCTGGAACTCGGTTACCAGCGGAACGACATAGACCTTTCCCC
GGGGCGCTTCCGGGCGAAGGGGGAGGTGTTGGAGATCTTCCCCGCCTACGAGACCGAGCCCATCCGGGTGGAGCTCTTTG
GCGACGAGGTGGAGCGCATCTCCCAGGTGCACCCCGTCACCGGGGAGCGGCTTCGGGAGCTTCCCGGGTTTGTCCTCTTT
CCCGCCACCCACTACCTCTCCCCGGAAGGCCTTGAGGAGATCCTGAAGGAGATTGAGAAGGAGCTCTGGGAGAGGGTCCG
CTACTTTGAGGAAAGAGGGGAAGTTCTCTACGCCCAGCGCCTCAAGGAGCGCACCCTCTACGACCTGGAGATGCTAAGGG
TCATGGGCACCTGCCCCGGGGTGGAGAACTACGCCCGCTACTTCACGGGGAAGGCCCCAGGGGAACCTCCTTACACCCTC
CTGGACTACTTCCCCGAGGACTTCCTGGTCTTCCTGGACGAGTCCCACGTGACCGTGCCCCAGCTTCAGGGGATGTACCG
GGGGGACTACGCCCGCAAGAAGACCCTGGTGGACTACGGCTTCCGCCTCCCCTCGGCGTTGGACAACCGCCCCCTTCGCT
TTGAGGAGTTTTTGGAGAGGGTTTCCCAGGTGGTCTTCGTCTCCGCCACCCCGGGGCCCTTTGAGCTAGCGCATTCGGGG
CGCGTGGTGGAGCAGATCATCCGGCCCACGGGGCTATTGGACCCCCTGGTGCGGGTCAAGCCCACGGAGAACCAGATCCT
GGACCTCATGGAGGGGATCCGGGAGAGGGCGGCAAGGGGCGAGCGCACCCTGGTCACGGTCCTCACGGTGCGCATGGCCG
AGGAGCTCACGAGCTTTTTGGTGGAGCACGGGATAAGGGCGCGCTACCTCCACCACGAGCTGGACGCCTTTGAGCGCCAG
GCCCTGATCCGGGACCTGAGGCTTGGCCACTACGACTGCCTCGTGGGGATCAACCTCCTCCGGGAGGGCCTGGACATCCC
CGAGGTCTCCCTGGTGGCCATCCTGGACGCGGACAAGGAGGGCTTCCTTAGAAGCGAGCGGAGCCTCATCCAGACCATCG
GCCGGGCGGCGAGGAACGCCAGGGGCGAGGTCTGGCTCTACGCCGACCGGGTCTCCGAGGCCATGCAGAGGGCCATAGAG
GAGACGAACCGGAGAAGGGCCCTCCAGGAGGCCTACAACCTGGAGCACGGCATCACCCCGGAGACGGTGCGGAAGGAGGT
TAGGGCCGTCATCCGCCCCGAGGGCTACGAGGAGGCCCCCCTCGAGGCCGACCTCTCCGGGGAGGACCTGAGGGAGAGGA
TCGCCGAGCTGGAGCTTGCCATGTGGCAGGCGGCGGAGGCTTTGGACTTTGAGCGGGCGGCGAGGCTTAGGGACGAGATC
CGGGCCCTCGAGGCCCGCCTCCAGGGCGTAAGGGCCCCTGAGCCCGTCCCCGGGGGGCGGAAGCGGAAGCGGAGGTGA

Domains

Predicted by InterProScan.

UvrB interaction domain (UvrB_inter)

(157-245)

UvrB/uvrC motif (UVR)

(612-645)

Helicase conserved C-terminal domain (Helicase_C)

(430-539)

Ultra-violet resistance protein B (UvrB)

(546-588)

Type III restriction enzyme, res subunit (ResIII)

(13-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 1C4O
  PDB 1D2M
  PDB 7EGT

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

56.811

97.143

0.552
  uvrB Streptococcus pneumoniae R6

56.811

97.143

0.552
  uvrB Streptococcus pneumoniae D39

56.811

97.143

0.552