Detailed information NTG0528060

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: BAJP3144_RS13795
• Genome accession: NZ_CP082283
• Coordinates: 2799303..2800571 (+)
• Length: 422 a.a.
• NCBI ID: WP_072177616.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain JP3144
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2794303..2805571

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BAJP3144_RS13775 (BAJP3144_13775)	-	2795674..2796294 (-)	621	WP_088461189.1	lipopolysaccharide assembly protein LapB	-
BAJP3144_RS13780 (BAJP3144_13780)	mnmA	2796382..2797497 (-)	1116	WP_012118077.1	tRNA 2-thiouridine(34) synthase MnmA	-
BAJP3144_RS13785 (BAJP3144_13785)	-	2797534..2798673 (-)	1140	WP_007612815.1	cysteine desulfurase family protein	-
BAJP3144_RS13790 (BAJP3144_13790)	cymR	2798692..2799108 (-)	417	WP_003152730.1	cysteine metabolism transcriptional regulator CymR	-
BAJP3144_RS13795 (BAJP3144_13795)	rarA	2799303..2800571 (+)	1269	WP_072177616.1	replication-associated recombination protein A	Machinery gene
BAJP3144_RS13800 (BAJP3144_13800)	-	2800685..2801449 (-)	765	WP_022552891.1	ThiF family adenylyltransferase	-
BAJP3144_RS13810 (BAJP3144_13810)	aspS	2801775..2803553 (-)	1779	WP_007408199.1	aspartate--tRNA ligase	-
BAJP3144_RS13815 (BAJP3144_13815)	hisS	2803571..2804842 (-)	1272	WP_021494380.1	histidine--tRNA ligase	-
BAJP3144_RS13820 (BAJP3144_13820)	-	2805199..2805369 (-)	171	WP_003152722.1	YrzK family protein	-

Sequence

Protein

• Length: 422 a.a.
• Molecular weight: 46659.63 Da
• Isoelectric Point: 9.0119

>NTDB_id=528060 BAJP3144_RS13795 WP_072177616.1 2799303..2800571(+) (rarA) [Bacillus amyloliquefaciens strain JP3144]
MKPLAYRMRPANIEDIIGQEHLVKEDKIIGRMVRAKHLSSMILYGPPGIGKTSIATAIAGSTSIAFRKLNAVIHNKKDME
IVVQEAKMSGQVILILDEVHRLDKGKQDFLLPYLENGMIILIGATTANPYHAINPAIRSRTQIFELEPLTPDLIKQALKR
ALTDKHRGLGSYSVSVDDDAMDHFAQGCGGDVRSALNALELAVLSTKESSDGTIRITRETAEECLQKKSYTHDKNGDAHY
DVLSAFQKSIRGSDANAALHYLARLIEAGDLESLSRRLLVIAYEDIGLASPQAGPRVLSAIQTAERIGFPEARIPLANAV
IELCLSPKSNSAISAVDEALKDIRTGKIGDVPKHLKDAHYKGAQELGRGIGYQYPHDFENGWVEQQYLPDPLKNKQYYKP
KQTGKFEAAIKQVYEKLMKQKK

Nucleotide

• Length: 1269 bp

>NTDB_id=528060 BAJP3144_RS13795 WP_072177616.1 2799303..2800571(+) (rarA) [Bacillus amyloliquefaciens strain JP3144]
ATGAAACCATTGGCGTATCGGATGCGGCCTGCCAATATCGAAGACATTATCGGCCAGGAACATTTGGTCAAAGAAGATAA
AATCATCGGCAGAATGGTGCGTGCAAAGCACTTATCATCCATGATCCTGTACGGACCGCCGGGCATCGGAAAAACGTCCA
TCGCCACAGCGATCGCAGGATCGACAAGCATCGCATTCAGGAAATTGAATGCCGTCATTCATAATAAAAAAGACATGGAG
ATTGTCGTACAGGAAGCGAAAATGTCAGGCCAGGTCATTTTAATCCTTGACGAAGTGCACAGGCTTGATAAGGGAAAGCA
GGATTTTCTGCTGCCCTATTTAGAAAACGGAATGATTATTTTAATCGGCGCGACGACCGCCAACCCTTATCATGCCATTA
ACCCGGCCATCAGAAGCCGGACCCAGATATTTGAGCTCGAACCGTTAACACCCGATCTGATCAAGCAGGCATTGAAAAGA
GCGCTCACAGATAAACACCGGGGACTCGGTTCCTACAGCGTTTCGGTGGACGACGACGCGATGGATCATTTCGCACAAGG
GTGCGGAGGAGACGTCCGCTCCGCTTTGAACGCACTGGAGCTTGCCGTGCTCTCTACAAAGGAATCAAGCGATGGCACGA
TCCGGATTACACGGGAAACGGCGGAAGAATGTCTGCAGAAAAAAAGCTATACTCATGATAAAAACGGCGATGCGCATTAT
GACGTCTTATCCGCCTTCCAAAAATCAATCCGAGGCTCGGACGCAAACGCCGCCCTTCATTATCTGGCCCGTCTGATCGA
AGCCGGAGACCTTGAAAGCTTATCAAGAAGGCTTCTCGTGATCGCCTATGAAGATATCGGCCTCGCAAGCCCGCAGGCAG
GCCCCCGGGTGCTGAGCGCGATTCAGACCGCAGAACGGATCGGCTTTCCGGAAGCGAGAATTCCGCTGGCCAATGCGGTA
ATCGAATTATGCCTCTCGCCAAAATCAAACTCCGCCATCTCAGCCGTTGATGAGGCGCTCAAAGACATCAGGACGGGTAA
AATCGGCGATGTGCCGAAACATTTAAAAGACGCCCACTATAAAGGGGCCCAAGAGCTCGGACGCGGGATCGGCTATCAAT
ATCCTCACGATTTCGAGAACGGATGGGTCGAACAGCAATATTTGCCTGATCCGTTAAAAAACAAGCAATACTATAAACCG
AAACAAACGGGGAAATTTGAAGCCGCCATAAAGCAAGTGTATGAAAAACTGATGAAGCAGAAAAAATAA

Domains

Predicted by InterProScan.

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (8-125)

• AAA C-terminal domain (AAA_assoc_2) (172-251)

• MgsA AAA+ ATPase C terminal (MgsA_C) (252-417)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	90.499	99.763	0.903