Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   BAJP3144_RS13905 Genome accession   NZ_CP082283
Coordinates   2822065..2823069 (-) Length   334 a.a.
NCBI ID   WP_222893395.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain JP3144     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2817065..2828069
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAJP3144_RS13875 (BAJP3144_13875) - 2818092..2818748 (-) 657 WP_095061077.1 DUF421 domain-containing protein -
  BAJP3144_RS13880 (BAJP3144_13880) - 2818915..2819301 (+) 387 WP_003152697.1 TIGR04086 family membrane protein -
  BAJP3144_RS13885 (BAJP3144_13885) yajC 2819354..2819614 (-) 261 WP_007408187.1 preprotein translocase subunit YajC -
  BAJP3144_RS13890 (BAJP3144_13890) tgt 2819645..2820790 (-) 1146 WP_014305500.1 tRNA guanosine(34) transglycosylase Tgt -
  BAJP3144_RS13895 (BAJP3144_13895) queA 2820818..2821846 (-) 1029 WP_022552886.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  BAJP3144_RS13900 (BAJP3144_13900) - 2821872..2822072 (-) 201 WP_003152687.1 DUF2905 domain-containing protein -
  BAJP3144_RS13905 (BAJP3144_13905) ruvB 2822065..2823069 (-) 1005 WP_222893395.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  BAJP3144_RS13910 (BAJP3144_13910) ruvA 2823080..2823685 (-) 606 WP_003152683.1 Holliday junction branch migration protein RuvA Machinery gene
  BAJP3144_RS13915 (BAJP3144_13915) - 2823820..2824329 (-) 510 WP_012118093.1 intercompartmental signaling factor BofC -
  BAJP3144_RS21000 - 2824462..2824581 (-) 120 WP_022552885.1 hypothetical protein -
  BAJP3144_RS13920 (BAJP3144_13920) - 2824714..2825307 (-) 594 WP_038461552.1 YhcN/YlaJ family sporulation lipoprotein -
  BAJP3144_RS13925 (BAJP3144_13925) safA 2825455..2826645 (-) 1191 WP_014418537.1 SafA/ExsA family spore coat assembly protein -
  BAJP3144_RS13930 (BAJP3144_13930) nadA 2826772..2827875 (-) 1104 WP_222893397.1 quinolinate synthase NadA -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 37211.49 Da        Isoelectric Point: 4.7732

>NTDB_id=528062 BAJP3144_RS13905 WP_222893395.1 2822065..2823069(-) (ruvB) [Bacillus amyloliquefaciens strain JP3144]
MDERLVSSEADSHESIIEQSLRPQNLAQYIGQKKVKENLRVFIDAAKMRQETLDHVLLYGPPGLGKTTLASIVANEMGVE
MRTTSGPAIERPGDLAAILTALEPGDVLFIDEIHRLNRSIEEVLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATT
RVGLLTAPLRDRFGVLSRLDYYTQEELTDIVSRTADVFEVDIEEAPALEIARRSRGTPRVANRLLRRVRDFAQVLGDSRI
TEEIAHDALERLQVDALGLDHIDHKLLMGMIEKFSGGPVGLDTISATIGEEPHTIEDVYEPYLLQIGFLQRTPRGRVVTP
AVYEHFRLEAPARD

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=528062 BAJP3144_RS13905 WP_222893395.1 2822065..2823069(-) (ruvB) [Bacillus amyloliquefaciens strain JP3144]
ATGGATGAACGGCTCGTTTCAAGTGAAGCAGACAGCCATGAATCAATAATCGAGCAAAGCCTCAGGCCGCAGAATCTCGC
CCAGTATATCGGCCAAAAGAAGGTGAAAGAAAATCTGCGCGTGTTTATCGATGCGGCAAAAATGAGGCAGGAGACACTGG
ACCACGTTCTTTTATACGGGCCTCCGGGTCTCGGGAAAACAACGCTTGCGTCTATCGTGGCCAATGAGATGGGTGTGGAG
ATGCGGACGACGTCAGGTCCCGCCATCGAAAGACCGGGAGATTTGGCAGCCATTTTGACGGCGCTCGAACCAGGGGATGT
GCTGTTTATAGACGAAATTCACAGGCTGAACCGCTCAATTGAGGAAGTGCTGTACCCGGCGATGGAGGATTTCTGCCTTG
ATATCGTCATCGGAAAAGGCCCGTCCGCCCGCTCCGTCCGTCTCGACCTTCCCCCTTTTACGCTTGTAGGAGCGACGACA
AGGGTCGGATTATTGACCGCACCGCTCAGAGACCGGTTCGGGGTGCTGTCGCGCCTTGATTACTATACGCAGGAAGAGCT
GACAGATATCGTGTCAAGAACGGCTGACGTTTTTGAAGTGGATATCGAAGAAGCCCCGGCTCTGGAAATCGCCAGACGGT
CAAGGGGAACGCCGCGGGTTGCAAACCGGCTTCTCAGAAGGGTGAGGGATTTTGCCCAGGTGCTCGGCGACAGCCGCATC
ACGGAAGAAATCGCTCACGACGCGCTCGAACGTCTTCAAGTCGATGCGCTCGGCCTTGACCATATCGACCATAAGCTGCT
GATGGGCATGATCGAAAAATTCAGCGGCGGTCCCGTCGGCCTTGATACGATTTCCGCGACAATCGGCGAAGAACCGCATA
CAATAGAGGATGTGTACGAACCGTATCTGCTGCAGATCGGATTTCTCCAGAGGACGCCGAGGGGACGGGTCGTGACTCCG
GCTGTGTATGAACATTTTCGATTGGAGGCGCCCGCCCGTGACTGA

Domains

Predicted by InterProScan.

RuvB C-terminal winged helix domain (WHD_RuvB)

(257-326)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(21-179)

RuvB AAA lid domain (AAA_lid_4)

(182-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

91.617

100

0.916
  ruvB Streptococcus pneumoniae TIGR4

60.429

97.605

0.59
  ruvB Streptococcus pneumoniae R6

60.429

97.605

0.59
  ruvB Streptococcus pneumoniae D39

60.429

97.605

0.59
  ruvB Synechocystis sp. PCC 6803

58.359

98.503

0.575
  ruvB Helicobacter pylori 26695

52.744

98.204

0.518