Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYD   Type   Machinery gene
Locus tag   I6J13_RS05925 Genome accession   NZ_CP068213
Coordinates   1225741..1226139 (-) Length   132 a.a.
NCBI ID   WP_006269995.1    Uniprot ID   -
Organism   Streptococcus constellatus strain FDAARGOS_1156     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1220741..1231139
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J13_RS05900 (I6J13_05900) - 1222464..1223663 (-) 1200 WP_006269979.1 acetate kinase -
  I6J13_RS05905 (I6J13_05905) comYH 1223710..1224663 (-) 954 WP_006269998.1 class I SAM-dependent methyltransferase Machinery gene
  I6J13_RS05910 (I6J13_05910) comGG 1224748..1225074 (-) 327 WP_003070783.1 competence type IV pilus minor pilin ComGG -
  I6J13_RS05915 (I6J13_05915) comGF/cglF 1225055..1225492 (-) 438 WP_006270001.1 competence type IV pilus minor pilin ComGF Machinery gene
  I6J13_RS05920 (I6J13_05920) comGE/cglE 1225476..1225769 (-) 294 WP_006269989.1 competence type IV pilus minor pilin ComGE Machinery gene
  I6J13_RS05925 (I6J13_05925) comYD 1225741..1226139 (-) 399 WP_006269995.1 competence type IV pilus minor pilin ComGD Machinery gene
  I6J13_RS05930 (I6J13_05930) comYC 1226129..1226446 (-) 318 WP_006269985.1 competence type IV pilus major pilin ComGC Machinery gene
  I6J13_RS05935 (I6J13_05935) comYB 1226443..1227465 (-) 1023 WP_037565861.1 competence type IV pilus assembly protein ComGB Machinery gene
  I6J13_RS05940 (I6J13_05940) comYA 1227407..1228348 (-) 942 WP_006269992.1 competence type IV pilus ATPase ComGA Machinery gene
  I6J13_RS05945 (I6J13_05945) - 1228418..1228783 (-) 366 WP_006269973.1 DUF1033 family protein -
  I6J13_RS05950 (I6J13_05950) glnA 1228971..1230317 (-) 1347 WP_006269977.1 type I glutamate--ammonia ligase -
  I6J13_RS05955 (I6J13_05955) - 1230356..1230715 (-) 360 WP_003070793.1 MerR family transcriptional regulator -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 15031.17 Da        Isoelectric Point: 9.4205

>NTDB_id=528051 I6J13_RS05925 WP_006269995.1 1225741..1226139(-) (comYD) [Streptococcus constellatus strain FDAARGOS_1156]
MQIKGFTLLESLLTLFMTSLLLLAVSGSVHSSFEQVEQQIFFLEFEHFYRESQKLSSAAQSQLDMNFSRERISNGYNHVA
VPRSIQAPEDLTLHFDKAGGNSSLGKVIFQTNKQTITYQLYLGNGKFKKTMR

Nucleotide


Download         Length: 399 bp        

>NTDB_id=528051 I6J13_RS05925 WP_006269995.1 1225741..1226139(-) (comYD) [Streptococcus constellatus strain FDAARGOS_1156]
TTGCAGATTAAAGGTTTTACGCTTTTGGAAAGTTTGCTGACCTTATTTATGACGAGTCTCTTATTGCTTGCTGTGTCAGG
TTCAGTACATTCATCGTTTGAGCAAGTAGAACAGCAAATTTTCTTTCTAGAGTTTGAGCATTTTTATCGGGAAAGTCAGA
AGTTGAGTAGTGCAGCTCAAAGTCAGTTGGACATGAATTTTTCTCGCGAGAGGATTTCCAATGGTTACAACCATGTGGCA
GTTCCTCGCTCGATTCAGGCTCCGGAAGACCTGACACTTCATTTTGACAAGGCAGGCGGTAATTCATCGCTCGGAAAGGT
TATCTTTCAGACAAATAAGCAAACAATTACGTATCAATTATATCTAGGAAATGGAAAATTTAAGAAAACAATGCGTTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYD Streptococcus gordonii str. Challis substr. CH1

60

98.485

0.591
  comGD/cglD Streptococcus mitis NCTC 12261

57.364

97.727

0.561
  comGD/cglD Streptococcus mitis SK321

57.48

96.212

0.553
  comGD/cglD Streptococcus pneumoniae Rx1

57.48

96.212

0.553
  comGD/cglD Streptococcus pneumoniae D39

57.48

96.212

0.553
  comGD/cglD Streptococcus pneumoniae R6

57.48

96.212

0.553
  comGD/cglD Streptococcus pneumoniae TIGR4

56.693

96.212

0.545
  comYD Streptococcus mutans UA140

49.231

98.485

0.485
  comYD Streptococcus mutans UA159

49.231

98.485

0.485