Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   I6I49_RS10850 Genome accession   NZ_CP068206
Coordinates   1824292..1824690 (+) Length   132 a.a.
NCBI ID   WP_201950020.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain FDAARGOS_1092     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 1822630..1823400 1824292..1824690 flank 892


Gene organization within MGE regions


Location: 1822630..1824690
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I49_RS10845 (I6I49_10835) mazG 1823512..1824273 (+) 762 WP_201950017.1 nucleoside triphosphate pyrophosphohydrolase -
  I6I49_RS10850 (I6I49_10840) comEA 1824292..1824690 (+) 399 WP_201950020.1 ComEA family DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14596.00 Da        Isoelectric Point: 10.8498

>NTDB_id=527984 I6I49_RS10850 WP_201950020.1 1824292..1824690(+) (comEA) [Acinetobacter johnsonii strain FDAARGOS_1092]
MIKIKVSLLIIALLLLSLLAWVPSGYAQSFDQNYLNWKAEQQAWDDRTQAPKSVKRAVSPVQAQPVSNANKISLNQASVD
QLQQLQGVGLKKAQAIVAYRQKQGPFKSIDELQQVRGIGPAIFAKNKTRLGL

Nucleotide


Download         Length: 399 bp        

>NTDB_id=527984 I6I49_RS10850 WP_201950020.1 1824292..1824690(+) (comEA) [Acinetobacter johnsonii strain FDAARGOS_1092]
TTGATAAAAATAAAAGTAAGTTTGTTGATCATTGCGTTGTTATTGCTGAGTTTATTGGCTTGGGTGCCCAGTGGTTATGC
ACAGTCTTTTGATCAGAACTATCTGAACTGGAAAGCAGAGCAGCAGGCGTGGGATGATCGTACTCAAGCCCCCAAGAGCG
TGAAACGTGCTGTGTCGCCTGTTCAGGCCCAACCTGTGTCGAACGCAAATAAAATTAGTTTAAATCAAGCCAGTGTTGAT
CAATTGCAGCAACTTCAGGGTGTGGGTTTAAAAAAGGCCCAGGCAATCGTGGCCTATCGCCAGAAACAAGGGCCATTTAA
GAGTATAGATGAGCTACAACAGGTGCGCGGGATTGGACCGGCAATTTTTGCAAAAAATAAAACCCGTTTGGGCTTGTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(67-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

53.279

92.424

0.492
  comEA Acinetobacter baumannii D1279779

49.194

93.939

0.462
  comEA Acinetobacter baylyi ADP1

45.794

81.061

0.371