Detailed information NTG0527979

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: I6I49_RS09520
• Genome accession: NZ_CP068206
• Coordinates: 1538445..1539305 (-)
• Length: 286 a.a.
• NCBI ID: WP_201953379.1
• Uniprot ID: -
• Organism: Acinetobacter johnsonii strain FDAARGOS_1092
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1533445..1544305

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I6I49_RS09495 (I6I49_09485)	recN	1533607..1535268 (-)	1662	WP_201953370.1	DNA repair protein RecN	-
I6I49_RS09500 (I6I49_09490)	-	1535659..1535982 (+)	324	WP_078388524.1	pyrimidine/purine nucleoside phosphorylase	-
I6I49_RS09505 (I6I49_09495)	rlmB	1536125..1536874 (+)	750	WP_004692717.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
I6I49_RS09510 (I6I49_09500)	-	1536906..1537823 (+)	918	WP_201953373.1	DMT family transporter	-
I6I49_RS09515 (I6I49_09505)	coaE	1537837..1538436 (-)	600	WP_201953376.1	dephospho-CoA kinase	-
I6I49_RS09520 (I6I49_09510)	pilD	1538445..1539305 (-)	861	WP_201953379.1	A24 family peptidase	Machinery gene
I6I49_RS09525 (I6I49_09515)	-	1539305..1540550 (-)	1246	Protein_1496	type II secretion system F family protein	-
I6I49_RS09530 (I6I49_09520)	pilB	1540581..1542293 (-)	1713	WP_114837769.1	type IV-A pilus assembly ATPase PilB	Machinery gene
I6I49_RS09535 (I6I49_09525)	tpiA	1542573..1543364 (+)	792	WP_114837770.1	triose-phosphate isomerase	-
I6I49_RS09540 (I6I49_09530)	secG	1543378..1543707 (+)	330	WP_058868796.1	preprotein translocase subunit SecG	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 31987.47 Da
• Isoelectric Point: 8.2629

>NTDB_id=527979 I6I49_RS09520 WP_201953379.1 1538445..1539305(-) (pilD) [Acinetobacter johnsonii strain FDAARGOS_1092]
MQEIISYLINTPMALYFAVGVFSLCIGSFLNVVIYRTPKMMVQEWRTDCQLLLHPEQPIIDETKLSLSKPASTCPQCKSA
IRWYQNVPVMSWLLLRGKCGTCHNPISIRYPAIELLTSICALVVVAVFGPTIQMLFGLVLTYILIALTFIDFDTQLLPDR
YTLTLAALGLGVNSYAIYTTPTMAIWGYIIGFLCLWIVYYLFKLITGKEGMGYGDFKLLAALGAWMGPLLLPLIVLLSSF
VGAIIGIILLKVRKENQPFAFGPYIAIAGWIAFLWGEQIMKIYLGN

Nucleotide

• Length: 861 bp

>NTDB_id=527979 I6I49_RS09520 WP_201953379.1 1538445..1539305(-) (pilD) [Acinetobacter johnsonii strain FDAARGOS_1092]
ATGCAAGAAATAATTTCCTATCTGATCAATACTCCAATGGCGCTGTATTTTGCCGTTGGAGTTTTTAGTTTGTGCATTGG
TAGTTTCCTGAATGTAGTGATCTATCGCACTCCAAAAATGATGGTACAAGAATGGCGCACCGACTGCCAACTTCTGCTTC
ATCCTGAACAGCCTATTATTGATGAAACGAAACTCTCGTTGAGCAAGCCTGCCTCGACCTGCCCCCAATGTAAAAGTGCC
ATACGCTGGTATCAAAATGTCCCTGTGATGAGTTGGTTACTGCTACGAGGAAAGTGTGGCACTTGCCATAACCCGATCAG
TATTCGCTACCCTGCGATTGAACTCCTGACCTCCATTTGTGCATTGGTCGTGGTTGCAGTCTTTGGCCCAACAATCCAAA
TGTTGTTTGGTCTCGTACTCACTTACATTTTAATCGCCTTAACTTTTATTGATTTTGACACTCAACTTTTACCTGATCGC
TATACCCTCACCCTTGCAGCTCTGGGTTTAGGGGTCAATAGTTATGCGATTTACACCACACCAACGATGGCTATTTGGGG
TTACATCATTGGCTTTTTATGCTTATGGATTGTCTACTATCTGTTTAAGCTCATCACAGGTAAGGAAGGTATGGGTTATG
GCGACTTTAAGTTACTTGCTGCTTTAGGCGCATGGATGGGCCCTTTGCTGCTGCCGCTGATTGTGCTACTTTCCTCTTTC
GTAGGTGCCATTATCGGCATCATTCTGCTCAAAGTGCGCAAAGAAAATCAGCCTTTTGCTTTTGGTCCATATATTGCCAT
CGCAGGTTGGATTGCCTTTCTGTGGGGTGAGCAAATTATGAAAATATATTTAGGCAATTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-127)

• Type IV leader peptidase family (Peptidase_A24) (138-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter nosocomialis M2	79.021	100	0.79
pilD	Acinetobacter baumannii D1279779	79.298	99.65	0.79
pilD	Vibrio cholerae strain A1552	52.809	93.357	0.493
pilD	Vibrio campbellii strain DS40M4	51.311	93.357	0.479
pilD	Neisseria gonorrhoeae MS11	45.055	95.455	0.43