Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   I6I49_RS08725 Genome accession   NZ_CP068206
Coordinates   1375088..1376221 (-) Length   377 a.a.
NCBI ID   WP_201953226.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain FDAARGOS_1092     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 1370088..1381221
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I49_RS08700 (I6I49_08695) - 1370801..1371400 (-) 600 WP_005401887.1 hypothetical protein -
  I6I49_RS08705 (I6I49_08700) - 1371592..1372137 (-) 546 WP_005401886.1 glutathione peroxidase -
  I6I49_RS08710 (I6I49_08705) - 1372261..1372815 (-) 555 WP_201953223.1 hypothetical protein -
  I6I49_RS08715 (I6I49_08710) - 1373153..1374073 (+) 921 WP_114837739.1 DMT family transporter -
  I6I49_RS08720 (I6I49_08715) - 1374473..1375042 (-) 570 WP_148826928.1 L-threonylcarbamoyladenylate synthase -
  I6I49_RS08725 (I6I49_08720) dprA 1375088..1376221 (-) 1134 WP_201953226.1 DNA-processing protein DprA Machinery gene
  I6I49_RS08730 (I6I49_08725) tsaP 1376244..1377398 (-) 1155 WP_201953229.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  I6I49_RS08735 (I6I49_08730) def 1377519..1378052 (+) 534 WP_201953233.1 peptide deformylase -
  I6I49_RS08740 (I6I49_08735) - 1378143..1378580 (+) 438 WP_201953235.1 DUF2946 family protein -
  I6I49_RS08745 (I6I49_08740) - 1378653..1379522 (+) 870 Protein_1348 TonB-dependent receptor plug domain-containing protein -
  I6I49_RS08750 (I6I49_08745) - 1379546..1380409 (-) 864 WP_004729973.1 IS982 family transposase -

Sequence


Protein


Download         Length: 377 a.a.        Molecular weight: 41676.18 Da        Isoelectric Point: 6.6278

>NTDB_id=527974 I6I49_RS08725 WP_201953226.1 1375088..1376221(-) (dprA) [Acinetobacter johnsonii strain FDAARGOS_1092]
MLNSLSHEQIATITLWYLVQHSLSSFQKLQQHFGTSTKAVAASNLQIWPNLGLHKSHLQRVAEIQTPAGQTKLQTLLHDV
QSSCDFILLDTESHYPSQLLPYSDRPPILFGQGNPQSLLQPQVAIVGSRKPSPHGKQVAYDFAYYLAEKGFYICSGLAEG
IDAAAHQGGLKHQRTIAVMGTGLDLTYPSQHLTLRTQILENNGCIITEFLPHTPPLQHNFPRRNRIVSALSLGVVVAEAA
LKSGSLGTAQRAAEQGKTIFAIPGHIYSEHHQGCHQLIREGAILVDHPEQIIEDLALPTQWHSQSQSQENTPSASIDIPS
DLLELYNQLDWVGQNMDQLNFKLNTDIATLTSQLMELEILGLAQQQAGNYLRCRSSQ

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=527974 I6I49_RS08725 WP_201953226.1 1375088..1376221(-) (dprA) [Acinetobacter johnsonii strain FDAARGOS_1092]
ATGCTGAACTCTTTATCACATGAACAGATTGCAACAATCACCCTGTGGTATTTAGTTCAGCATTCTTTATCGAGCTTTCA
AAAACTACAGCAGCATTTTGGCACAAGCACAAAAGCTGTTGCTGCTTCCAATCTTCAGATCTGGCCAAATCTCGGCTTAC
ACAAAAGCCATCTACAACGTGTCGCAGAAATCCAAACACCTGCTGGACAAACCAAATTACAAACTTTATTGCATGACGTC
CAATCCAGTTGTGATTTTATTTTGCTTGATACTGAAAGTCATTATCCCTCGCAGCTGCTGCCCTATTCTGACCGGCCACC
GATTTTATTTGGTCAGGGTAATCCACAAAGCCTATTACAACCTCAAGTTGCTATCGTCGGCAGTCGAAAACCCAGTCCAC
ACGGCAAACAAGTGGCTTATGACTTTGCCTATTACCTCGCTGAAAAGGGCTTTTATATTTGCAGTGGTTTGGCTGAAGGC
ATTGATGCAGCGGCACATCAGGGCGGCTTAAAACATCAACGTACCATTGCGGTGATGGGCACGGGCTTAGATCTCACTTA
CCCTTCCCAACATCTAACACTGCGTACGCAGATATTAGAAAATAATGGCTGTATTATTACTGAATTTTTACCACATACAC
CGCCTTTACAGCATAATTTTCCACGGCGCAACCGCATCGTCAGTGCATTGAGTTTAGGGGTTGTGGTTGCAGAAGCCGCA
CTCAAAAGTGGCTCTCTAGGAACCGCCCAAAGAGCCGCAGAGCAAGGGAAAACCATTTTTGCGATTCCCGGTCATATTTA
CAGTGAACACCATCAAGGCTGTCATCAACTGATCCGAGAAGGTGCGATTTTGGTCGATCATCCTGAGCAAATCATTGAAG
ACTTGGCACTTCCCACTCAATGGCATAGCCAATCCCAGTCGCAAGAAAACACCCCAAGCGCTAGTATTGATATCCCATCT
GATTTACTCGAACTTTATAATCAACTGGATTGGGTGGGACAAAATATGGATCAACTTAATTTCAAACTTAACACCGATAT
TGCCACACTCACTAGCCAGTTAATGGAACTGGAGATTTTGGGGCTCGCACAACAACAGGCTGGCAATTATCTGCGTTGCC
GTTCCAGCCAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii strain A118

66.489

99.735

0.663

  dprA Acinetobacter baumannii D1279779

64.737

100

0.653

  dprA Acinetobacter baylyi ADP1

61.417

100

0.621