Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   I6I50_RS07155 Genome accession   NZ_CP068195
Coordinates   1467081..1468505 (-) Length   474 a.a.
NCBI ID   WP_372239162.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain FDAARGOS_1093     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 1462081..1473505
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I50_RS07140 (I6I50_07140) lptG 1463141..1464211 (+) 1071 WP_159153611.1 LPS export ABC transporter permease LptG -
  I6I50_RS07145 (I6I50_07145) gpmI 1464335..1465882 (+) 1548 WP_159153610.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  I6I50_RS07150 (I6I50_07150) - 1465901..1467076 (+) 1176 WP_159153609.1 S41 family peptidase -
  I6I50_RS07155 (I6I50_07155) pilR 1467081..1468505 (-) 1425 WP_372239162.1 sigma-54-dependent transcriptional regulator Regulator
  I6I50_RS07160 (I6I50_07160) pilS 1468518..1470086 (-) 1569 WP_201707064.1 PAS domain-containing sensor histidine kinase Regulator
  I6I50_RS07165 (I6I50_07165) - 1470108..1470743 (-) 636 WP_004692836.1 response regulator -
  I6I50_RS07170 (I6I50_07170) - 1470957..1472012 (+) 1056 WP_159153606.1 serine hydrolase -
  I6I50_RS07175 (I6I50_07175) thrC 1472098..1473237 (-) 1140 WP_201707065.1 threonine synthase -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 53373.54 Da        Isoelectric Point: 6.5065

>NTDB_id=527939 I6I50_RS07155 WP_372239162.1 1467081..1468505(-) (pilR) [Acinetobacter johnsonii strain FDAARGOS_1093]
MVEKKPLVLLVDDEQDLCTLMQMSLSRMGIDTHIAYRLQEAVQALKTHQYDACLTDLNLPDGNGLSLVDFIAQNYPNLPV
AVLTAYGNMDIAIAALKAGAFDFVSKPINQKHLEQLLQKAFNQPISQLHIQEDTLEHRLLIGQSLPIQQLRITLKKIARS
QAPVFITGESGTGKEVVANLVHRLSNRNEGPFIAINCGAIPTELMESELFGHRKGSFTGATQDKQGLILSAHGGSLFLDE
IAELPLTMQVKLLRAVQEKRIRPIGSDTEIDVDFRVISASHQDLEALVQQGKFRQDLYFRIHVMDIVLPALRERGNDIIL
LAQHFIQKICQEWDIPVKPLSERAREFLLAQYYPGNVRELRNMMERAITLSDESSIDLPHLQTAPLRPIAQTNYANATQQ
GTVGNDQLSHMPSRKLPEEGLELYLEKIEKEILMNALNLTHWNRTLAAKKLGMSFRSLRYRLKKFGLDGEDDPV

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=527939 I6I50_RS07155 WP_372239162.1 1467081..1468505(-) (pilR) [Acinetobacter johnsonii strain FDAARGOS_1093]
ATCGTGGAAAAAAAACCACTTGTTTTATTGGTGGATGACGAACAAGACTTATGTACACTGATGCAAATGTCTTTAAGTCG
GATGGGGATTGATACACATATTGCCTATCGCTTACAAGAGGCGGTTCAAGCCCTGAAAACGCATCAATATGATGCCTGTC
TAACCGATCTTAATTTACCCGATGGTAATGGTCTGAGCTTGGTCGATTTTATTGCTCAAAATTATCCTAATTTGCCTGTT
GCAGTGCTGACTGCTTACGGCAATATGGATATTGCGATTGCAGCACTTAAAGCTGGTGCTTTTGATTTTGTCAGTAAACC
AATCAACCAAAAACATTTAGAGCAACTTTTACAAAAAGCCTTTAATCAGCCCATCAGTCAACTGCATATCCAAGAAGATA
CGCTTGAACATCGCCTGCTGATTGGTCAATCCCTTCCTATTCAGCAGCTACGCATCACCTTAAAGAAAATTGCACGTTCG
CAAGCCCCTGTCTTTATTACGGGTGAATCGGGGACCGGCAAAGAAGTGGTGGCTAATCTGGTACATCGCCTGAGCAACCG
CAATGAAGGGCCATTTATTGCCATTAACTGCGGTGCCATACCGACTGAACTGATGGAAAGTGAATTGTTTGGACACCGTA
AGGGTAGCTTTACAGGGGCGACTCAAGACAAACAAGGGCTGATTCTGTCTGCGCATGGCGGCAGTTTATTTTTAGATGAA
ATTGCTGAGTTACCACTCACTATGCAGGTGAAACTGCTGCGCGCGGTACAAGAAAAACGCATTCGTCCAATTGGGAGTGA
CACCGAAATTGATGTCGATTTCCGTGTGATTAGTGCCAGCCATCAAGACTTAGAAGCACTGGTGCAACAAGGCAAGTTCC
GTCAGGATTTATACTTCCGCATCCATGTCATGGACATTGTGCTGCCTGCCCTACGTGAGCGTGGCAATGACATTATTCTT
TTGGCACAACATTTCATTCAAAAAATCTGCCAAGAATGGGACATCCCAGTCAAACCACTGAGTGAACGTGCACGTGAGTT
TTTATTGGCCCAATATTATCCAGGCAATGTGCGTGAATTACGCAATATGATGGAACGTGCCATCACTTTAAGCGATGAAA
GCAGTATCGACTTACCGCACTTGCAAACAGCCCCACTGCGACCCATTGCTCAGACCAACTATGCCAATGCCACCCAACAA
GGTACTGTTGGCAATGATCAACTCAGTCATATGCCTTCGCGTAAATTACCCGAAGAGGGTTTAGAGCTGTATCTAGAAAA
AATTGAAAAAGAAATTTTGATGAATGCGCTCAATCTCACCCACTGGAACCGAACACTAGCGGCTAAAAAGCTCGGCATGT
CTTTCCGTTCTTTACGTTATCGCTTGAAGAAATTCGGACTAGATGGCGAAGACGATCCCGTTTAA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(140-306)

Bacterial regulatory protein, Fis family (HTH_8)

(425-465)

Response regulator receiver domain (Response_reg)

(8-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

74.895

100

0.749
  pilR Pseudomonas aeruginosa PAK

48.922

97.89

0.479