Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   I6I50_RS07160 Genome accession   NZ_CP068195
Coordinates   1468518..1470086 (-) Length   522 a.a.
NCBI ID   WP_201707064.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain FDAARGOS_1093     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 1463518..1475086
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I50_RS07145 (I6I50_07145) gpmI 1464335..1465882 (+) 1548 WP_159153610.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  I6I50_RS07150 (I6I50_07150) - 1465901..1467076 (+) 1176 WP_159153609.1 S41 family peptidase -
  I6I50_RS07155 (I6I50_07155) pilR 1467081..1468505 (-) 1425 WP_372239162.1 sigma-54-dependent transcriptional regulator Regulator
  I6I50_RS07160 (I6I50_07160) pilS 1468518..1470086 (-) 1569 WP_201707064.1 PAS domain-containing sensor histidine kinase Regulator
  I6I50_RS07165 (I6I50_07165) - 1470108..1470743 (-) 636 WP_004692836.1 response regulator -
  I6I50_RS07170 (I6I50_07170) - 1470957..1472012 (+) 1056 WP_159153606.1 serine hydrolase -
  I6I50_RS07175 (I6I50_07175) thrC 1472098..1473237 (-) 1140 WP_201707065.1 threonine synthase -
  I6I50_RS07180 (I6I50_07180) - 1473303..1474607 (-) 1305 WP_201707066.1 homoserine dehydrogenase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 59690.20 Da        Isoelectric Point: 6.3035

>NTDB_id=527940 I6I50_RS07160 WP_201707064.1 1468518..1470086(-) (pilS) [Acinetobacter johnsonii strain FDAARGOS_1093]
MLQYSTNIQLNQYRLGVWYASYRLFIGCCLLLVYLLTYEQLFSNYQYPVLYRSVLIGFIFISAFQLLSLKHVRKRIPLQL
TLLFIIDVISLSLLTFATDGPNLQLSLLFVITIFAACVLVDKQKALIITLIAVITLVYQHFIGTLFSISSLNTIGNSAVL
AFLFFVVYGSGQIAVRRFQVLENLNFYQSQELDQLQNINRYILEQTELGYLVLDENCHMVLSNPAACALLGISPIYAYDK
YPLYKAQPDLFELLKFDQLKNGEKFQFTSQLSRFQIQIEIQKLQVPNQTLTLFVLQDAQKINQRVQQLKLAALGQLSASI
AHEIRNPLAAITQANELMQTNDPQQELLQNMIAKQASRIDKIIGDTLSMARSKETYPTLIDVAAFLERFIVEDLPDVKDQ
IDYRISDQAQIQFDEQQLRQVLINLIRNAIRHNAAEAEHIQIRIYSYKNLVHIEVCDFGEGVATQDQSTLFQPFFSTSIN
GTGLGLYLSHSFCEANQAKLYYVEQKIGACFRIECPRINNDV

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=527940 I6I50_RS07160 WP_201707064.1 1468518..1470086(-) (pilS) [Acinetobacter johnsonii strain FDAARGOS_1093]
ATGCTGCAATACTCAACCAATATTCAGTTAAATCAATACCGTTTAGGTGTTTGGTATGCGTCTTATCGACTGTTTATTGG
CTGCTGTTTGTTGTTGGTTTATCTACTGACCTATGAGCAGTTGTTTTCAAATTATCAATATCCAGTATTGTATCGTTCTG
TCCTGATTGGCTTTATTTTTATCAGTGCCTTTCAGCTATTGAGCCTCAAGCATGTGCGCAAGCGCATACCACTTCAGCTC
ACCTTGTTGTTTATCATCGATGTCATTAGCCTCAGTTTACTCACTTTTGCCACCGATGGTCCGAACTTACAGTTAAGCTT
ATTGTTTGTGATCACGATCTTTGCCGCTTGTGTATTGGTCGATAAACAAAAAGCGCTCATCATCACCTTGATTGCTGTAA
TTACACTGGTTTATCAACACTTTATTGGAACTCTGTTTTCAATTAGTTCACTGAATACCATTGGCAACAGTGCCGTGCTC
GCCTTTTTGTTCTTTGTGGTTTATGGGTCTGGACAAATTGCGGTACGACGTTTTCAAGTCCTTGAAAATTTAAACTTCTA
TCAGTCCCAAGAACTGGACCAACTACAAAACATTAACCGTTATATTTTAGAGCAAACCGAGCTCGGCTATTTGGTGCTCG
ATGAAAACTGCCACATGGTGTTGAGTAATCCTGCCGCATGTGCATTATTGGGTATCTCTCCAATTTATGCCTATGACAAA
TATCCTTTATATAAGGCACAGCCTGATTTATTTGAACTACTCAAATTCGACCAACTGAAGAATGGGGAAAAATTCCAATT
TACATCGCAACTGAGTCGCTTTCAGATTCAGATCGAAATTCAAAAACTTCAAGTCCCGAATCAGACACTGACCTTATTCG
TGCTGCAAGATGCACAAAAAATTAATCAACGTGTACAACAACTCAAGCTGGCTGCACTGGGTCAACTTTCTGCCAGCATT
GCACATGAAATTCGCAACCCACTGGCAGCCATCACACAAGCTAATGAACTAATGCAAACCAATGATCCACAACAAGAACT
GTTGCAGAACATGATTGCCAAACAAGCCTCAAGGATTGATAAAATTATTGGTGATACACTGAGCATGGCACGCAGTAAAG
AAACCTATCCGACCTTAATTGATGTCGCCGCTTTTTTAGAACGTTTTATCGTTGAAGATTTGCCCGATGTCAAAGATCAA
ATTGATTACCGCATTTCCGATCAAGCTCAGATTCAGTTTGATGAACAACAACTGAGACAAGTGCTGATCAACCTGATTCG
AAATGCCATTCGTCATAATGCAGCTGAAGCCGAGCACATTCAAATTCGTATCTATAGCTACAAAAACCTCGTCCATATTG
AGGTCTGCGATTTTGGTGAAGGGGTCGCCACTCAGGATCAAAGCACCCTGTTTCAACCGTTTTTTAGTACCTCCATCAAT
GGAACTGGGTTAGGATTATATTTATCCCATAGTTTCTGCGAAGCCAACCAAGCTAAGCTATACTATGTAGAACAAAAAAT
AGGGGCATGCTTTAGGATTGAATGCCCCCGTATAAACAATGACGTGTAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(414-516)

His Kinase A (phospho-acceptor) domain (HisKA)

(312-373)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

59.885

99.808

0.598