Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   I6I53_RS06175 Genome accession   NZ_CP068176
Coordinates   1200360..1201790 (-) Length   476 a.a.
NCBI ID   WP_004995357.1    Uniprot ID   A0A7T9Z7R7
Organism   Acinetobacter ursingii strain FDAARGOS_1096     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 1195360..1206790
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I53_RS06160 (I6I53_06165) lptG 1196396..1197466 (+) 1071 WP_004995360.1 LPS export ABC transporter permease LptG -
  I6I53_RS06165 (I6I53_06170) gpmI 1197598..1199148 (+) 1551 WP_004995359.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  I6I53_RS06170 (I6I53_06175) - 1199160..1200338 (+) 1179 WP_004995358.1 S41 family peptidase -
  I6I53_RS06175 (I6I53_06180) pilR 1200360..1201790 (-) 1431 WP_004995357.1 sigma-54 dependent transcriptional regulator Regulator
  I6I53_RS06180 (I6I53_06185) pilS 1201810..1203378 (-) 1569 WP_004995356.1 PAS domain-containing sensor histidine kinase Regulator
  I6I53_RS06185 (I6I53_06190) - 1203400..1204035 (-) 636 WP_004995355.1 response regulator -
  I6I53_RS06190 (I6I53_06195) pbpG 1204250..1205311 (+) 1062 WP_080633167.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  I6I53_RS06195 (I6I53_06200) thrC 1205413..1206552 (-) 1140 WP_004995351.1 threonine synthase -

Sequence

Protein


Download         Length: 476 a.a.        Molecular weight: 53619.53 Da        Isoelectric Point: 6.6692

>NTDB_id=527821 I6I53_RS06175 WP_004995357.1 1200360..1201790(-) (pilR) [Acinetobacter ursingii strain FDAARGOS_1096]
MVNKQPLVLLVDDEEDLCALMQMTLARMGIATHCAYRIAQAKELLQNNNYDACLTDLNLPDGNGLDLVHYVTQHWSHLPI
AVLTAYGNMDIAIAALKAGAFDFVSKPVNQIHLEQLLQKAFNRPQKQIINDEDSLENRLLIGRSAPIQQLRTTLKKIARS
QAPVFVTGESGTGKEVIANLVHRLSNRSEGPFIAINCGAIPSELLESELFGHKKGSFSGATQDKQGLILSAHGGSLFLDE
IAELPLNMQVKLLRAVQEKKVRPVGSEHEIDVDFRVISASHQDLETLVQQGKFRQDLFFRIHVMDLELPPLRERGQDILL
LAHHFIQKVCAEWEIPVKILSERAQAFLLEQYFPGNVRELRNMMERAITLSDDHQIDLPHLQTAPFRYSQATAPIQHHSD
YLSSANSNHSVPTTLAGNKLPHEGLEQYLENVEKEILLNALNLTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTEEI

Nucleotide


Download         Length: 1431 bp        

>NTDB_id=527821 I6I53_RS06175 WP_004995357.1 1200360..1201790(-) (pilR) [Acinetobacter ursingii strain FDAARGOS_1096]
ATGGTGAATAAACAACCGCTGGTTTTACTGGTTGATGATGAAGAAGATCTCTGTGCGTTAATGCAAATGACGCTGGCACG
TATGGGGATAGCAACACATTGTGCTTATCGTATTGCGCAGGCGAAAGAACTTCTGCAAAACAATAATTATGATGCCTGTT
TGACTGATTTAAATCTGCCTGATGGCAATGGGCTAGATCTAGTGCATTATGTTACACAGCATTGGAGTCACTTGCCGATC
GCAGTATTAACCGCCTATGGCAACATGGATATTGCAATTGCAGCACTTAAAGCAGGTGCTTTTGATTTTGTCAGTAAGCC
TGTCAACCAAATCCATTTAGAACAATTATTACAAAAAGCTTTTAATCGACCACAAAAGCAGATCATCAATGATGAAGATA
GTCTGGAAAACAGACTACTCATTGGCCGTTCTGCACCAATCCAGCAACTACGCACCACGCTTAAGAAAATTGCACGCTCA
CAAGCACCCGTCTTTGTCACAGGAGAATCTGGCACAGGCAAGGAAGTGATCGCCAATCTGGTGCACCGTTTAAGTAATCG
CAGCGAAGGCCCATTTATTGCCATTAACTGTGGCGCAATTCCCAGTGAACTTTTAGAGAGTGAGCTATTCGGTCACAAGA
AAGGAAGTTTTAGCGGTGCAACTCAAGACAAGCAAGGTCTGATCTTATCGGCACATGGCGGTAGTTTATTTCTGGATGAA
ATCGCCGAATTACCTTTGAATATGCAAGTTAAACTGTTACGGGCTGTACAAGAGAAAAAAGTTCGTCCAGTGGGTTCTGA
ACACGAAATTGATGTGGATTTTCGCGTCATTAGTGCCAGTCATCAGGATCTTGAAACATTGGTACAACAAGGTAAATTCC
GTCAGGATTTATTTTTCCGTATTCATGTGATGGATCTTGAACTTCCTCCATTACGTGAACGTGGACAGGACATTTTACTC
CTAGCCCATCATTTTATTCAAAAAGTGTGTGCTGAATGGGAAATTCCAGTCAAGATTTTGTCTGAACGCGCTCAGGCTTT
TTTATTAGAACAATATTTCCCCGGTAATGTTCGTGAATTACGTAATATGATGGAACGCGCCATTACTTTAAGTGATGACC
ATCAAATTGATTTACCTCACTTACAAACCGCGCCTTTTCGTTATAGCCAAGCAACGGCACCGATTCAACATCATTCTGAT
TATCTTTCTAGCGCAAATTCAAATCACTCAGTGCCTACGACATTGGCAGGCAACAAACTGCCACATGAAGGGCTAGAACA
ATATTTAGAAAACGTTGAAAAAGAGATTCTCTTAAATGCACTCAATTTGACGCATTGGAATCGTACTTTGGCGGCCAAAA
AACTAGGCATGACTTTTCGATCTTTGCGCTATCGCCTGAAAAAATTTGGGTTAGATACTGAAGAGATTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-117)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)

Bacterial regulatory protein, Fis family (HTH_8)

(429-469)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

76.778

100

0.771
  pilR Pseudomonas aeruginosa PAK

49.462

97.689

0.483