Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   I6I53_RS06180 Genome accession   NZ_CP068176
Coordinates   1201810..1203378 (-) Length   522 a.a.
NCBI ID   WP_004995356.1    Uniprot ID   A0A7T9Z7L3
Organism   Acinetobacter ursingii strain FDAARGOS_1096     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 1196810..1208378
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I53_RS06165 (I6I53_06170) gpmI 1197598..1199148 (+) 1551 WP_004995359.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  I6I53_RS06170 (I6I53_06175) - 1199160..1200338 (+) 1179 WP_004995358.1 S41 family peptidase -
  I6I53_RS06175 (I6I53_06180) pilR 1200360..1201790 (-) 1431 WP_004995357.1 sigma-54 dependent transcriptional regulator Regulator
  I6I53_RS06180 (I6I53_06185) pilS 1201810..1203378 (-) 1569 WP_004995356.1 PAS domain-containing sensor histidine kinase Regulator
  I6I53_RS06185 (I6I53_06190) - 1203400..1204035 (-) 636 WP_004995355.1 response regulator -
  I6I53_RS06190 (I6I53_06195) pbpG 1204250..1205311 (+) 1062 WP_080633167.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  I6I53_RS06195 (I6I53_06200) thrC 1205413..1206552 (-) 1140 WP_004995351.1 threonine synthase -
  I6I53_RS06200 (I6I53_06205) - 1206613..1207914 (-) 1302 WP_004995349.1 homoserine dehydrogenase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 59604.37 Da        Isoelectric Point: 6.1856

>NTDB_id=527822 I6I53_RS06180 WP_004995356.1 1201810..1203378(-) (pilS) [Acinetobacter ursingii strain FDAARGOS_1096]
MQAQSSTPLSYTIYRLGLWYTLYRLLIVTGLIIIFQLISEQLNADYNQPVLYFYTLIAYCAASLIQFLLFKFYPRQIDRQ
LIILFVVDVIALGLLTFSLGAPNLNISLLYVITVFSAAILLPKKVSLVITLLAVISLIYQQFFSSFFDYNNLSTIGNSAL
LAFLFFVMYGIGQVAVKHFKILENISFRQSQALYQLQNINRYILEQIDDGYLVLDENYHVVLSNPAACTLLGIPPLFAHE
QLPLAKTQPDLFELLRFDPLEDGEQFIFESQLSTYNVHIKVQRLIVPHQALILLRLQDVQQLNQQVQQLKLAALGQLSAS
IAHEIRNPLAAIVQANELYIGSESEQQHLLQKMISKQSKRINDIIEDTLRMARNDTTHPMLIELDSFLSHLLTEDLSDVQ
HQIRLEMTEKVIVQFDPKQLTQVLINLIRNALRHNDPDVDQIVLSVRMVQAEVFIDVIDFGNGIEKRDISQLFKPFFSTE
IKGTGLGLYLSHSLCEANHAKLSYVEQQKGACFRIQCSTKDK

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=527822 I6I53_RS06180 WP_004995356.1 1201810..1203378(-) (pilS) [Acinetobacter ursingii strain FDAARGOS_1096]
ATGCAGGCGCAATCTTCTACGCCACTTTCTTATACGATTTACCGTTTAGGTTTGTGGTACACCCTTTACCGCCTGCTTAT
TGTCACAGGTTTAATCATTATTTTTCAGCTCATTTCTGAGCAGTTAAATGCCGACTATAATCAGCCTGTGTTGTATTTTT
ATACGCTTATCGCTTATTGCGCAGCCAGTCTGATTCAGTTTTTATTGTTTAAGTTTTATCCACGACAGATTGATCGTCAA
CTGATTATACTGTTCGTGGTTGATGTCATCGCATTGGGGTTGCTGACGTTTTCTCTGGGCGCACCAAATTTAAATATTAG
TTTGCTGTATGTTATTACGGTGTTTTCTGCCGCGATTTTATTGCCCAAAAAAGTCTCTTTGGTGATCACGCTTCTTGCTG
TTATTTCACTGATCTATCAACAGTTTTTTTCAAGTTTTTTTGATTATAATAATTTAAGCACCATTGGAAATAGTGCTTTA
CTGGCTTTTTTGTTTTTTGTCATGTATGGCATTGGTCAGGTTGCTGTAAAACATTTTAAAATTCTGGAAAATATTAGCTT
TCGTCAATCCCAAGCACTTTATCAACTTCAAAATATTAATCGTTATATTTTAGAACAAATTGATGATGGCTATCTGGTAT
TAGATGAAAACTACCATGTGGTGCTCAGCAATCCAGCCGCCTGTACGCTGTTGGGGATTCCGCCATTATTTGCGCATGAA
CAACTTCCGTTGGCCAAAACCCAGCCCGATTTATTTGAGCTCTTAAGATTTGATCCCCTAGAAGACGGCGAACAGTTTAT
TTTTGAATCACAACTGTCTACTTATAACGTGCATATCAAGGTACAACGCTTGATCGTCCCTCATCAGGCTTTAATTTTAT
TGCGCTTGCAGGATGTGCAGCAGCTCAATCAACAGGTTCAACAGCTTAAACTTGCCGCCTTAGGACAACTTTCCGCCAGT
ATTGCCCACGAAATTCGTAACCCATTGGCAGCGATTGTACAGGCCAATGAACTGTATATTGGCAGCGAATCTGAACAGCA
GCATTTACTGCAAAAAATGATCAGTAAACAATCAAAACGTATCAATGATATTATTGAAGATACATTGCGCATGGCGCGTA
ATGACACCACGCATCCGATGCTGATTGAGTTAGATAGTTTTTTGTCTCATTTACTGACTGAAGATTTATCCGATGTTCAA
CATCAAATCCGCTTGGAGATGACCGAGAAGGTAATCGTTCAATTTGATCCAAAACAGTTAACCCAAGTTTTAATCAACCT
GATTCGCAATGCATTACGCCATAATGATCCAGATGTTGATCAGATTGTATTATCCGTACGTATGGTTCAAGCTGAAGTAT
TCATTGATGTGATTGATTTTGGCAATGGCATCGAAAAACGTGATATATCGCAACTATTTAAGCCATTTTTTAGTACCGAA
ATCAAGGGAACTGGTTTAGGATTATATTTGTCCCATAGTCTGTGTGAAGCCAATCATGCCAAGCTCAGTTATGTGGAACA
ACAAAAAGGGGCATGTTTTAGAATTCAATGCTCAACAAAAGATAAATAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(416-516)

His Kinase A (phospho-acceptor) domain (HisKA)

(313-376)

PAS domain (PAS_8)

(201-250)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

63.514

99.234

0.63