Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA/comEC   Type   Machinery gene
Locus tag   I6I53_RS00625 Genome accession   NZ_CP068176
Coordinates   6516..8972 (-) Length   818 a.a.
NCBI ID   WP_010588658.1    Uniprot ID   -
Organism   Acinetobacter ursingii strain FDAARGOS_1096     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1516..13972
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I53_RS00605 (I6I53_00605) - 1743..3107 (+) 1365 WP_005003150.1 amino acid permease -
  I6I53_RS00610 (I6I53_00610) - 3578..4402 (-) 825 WP_026039882.1 alpha/beta fold hydrolase -
  I6I53_RS00615 (I6I53_00615) sppA 4420..5436 (-) 1017 WP_004990442.1 signal peptide peptidase SppA -
  I6I53_RS00620 (I6I53_00620) - 5573..6547 (+) 975 WP_004990443.1 lysophospholipid acyltransferase family protein -
  I6I53_RS00625 (I6I53_00625) comA/comEC 6516..8972 (-) 2457 WP_010588658.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  I6I53_RS00630 (I6I53_00630) lolD 9059..9748 (-) 690 WP_004996415.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  I6I53_RS00635 (I6I53_00635) - 9741..10976 (-) 1236 WP_004990448.1 lipoprotein-releasing ABC transporter permease subunit -
  I6I53_RS00640 (I6I53_00640) - 11003..11572 (+) 570 WP_004990450.1 PilZ domain-containing protein -
  I6I53_RS00645 (I6I53_00645) - 11590..12525 (-) 936 WP_004990452.1 DMT family transporter -
  I6I53_RS00650 (I6I53_00650) - 12535..13008 (-) 474 WP_004990454.1 YaiI/YqxD family protein -

Sequence

Protein


Download         Length: 818 a.a.        Molecular weight: 93467.78 Da        Isoelectric Point: 8.3667

>NTDB_id=527801 I6I53_RS00625 WP_010588658.1 6516..8972(-) (comA/comEC) [Acinetobacter ursingii strain FDAARGOS_1096]
MLKIILLGWIAGISLMGYSLPYLKSISVYVIVFVLILWMIYFVKIKTCSENISFKAVLIASSTFVMLILGDLYTDHALTE
HLKYKEMTSRRASEVIYIRKIGESTEHGIKQPIEILSQNKPTVIWLAYIDDQLLENMQINNNSLALGQYYQVQGIVKPVH
GYANAGGFDQEKWFVQQNWMSGFQVQQIQPLSMQQVYGLGFQQHLKQQNNLWHKFGLNIEQLRLDFRIQLLQQPLKYEAL
MLALLTGDRSLLDKNTEQMFQRFGISHLLAISGPHVLILAALFTWLLSSIIHKYQPTLYLRFPRKILMIVPFCSCVFIYT
AFVGFEIPALRTLLFTLIASLFLIFKHEIRPFNLLLYTASLSVWIDPLSILSAAFWLSYGACFILLNIYQSMQHQSDSVP
NLRQKIWKNSKILVQSQWKIFIALCPLVLIFFKQLSWIAPITNLIVIPFLGGMIVPLGIIAACICLLIPSLGQLLFHIND
LLIGLLFFILNGLDHLFQPELYAFALTPMLLLSFSLGIVLLFLPRGSIPKSWAVLCICPIFLLAWIKRDTQISVIDVGQG
QSVFVQDASLRMLIDTGGYYDESKFSIGQNVVVPYLKSQGVAQLDRILLSHLDQDHSGALAAVLQQTRVKHLMANETLPQ
PTLSLQTDASFSRCHTGQTWQTSEIRLQILSPEPVDDQTIQYNRNEYSCVVYLELLKANGLRRFLIMGDAGWETEYQILH
KYPDLKVDVLVLGHHGSKHSSSYDFLKHYQPKIAVASVGYTNRYGHPSLETLSRLDALHIPLYTTIQSGTITFKVEDHEV
KLEQYRNTVKWLNLYESY

Nucleotide


Download         Length: 2457 bp        

>NTDB_id=527801 I6I53_RS00625 WP_010588658.1 6516..8972(-) (comA/comEC) [Acinetobacter ursingii strain FDAARGOS_1096]
ATGTTAAAAATTATATTGTTGGGATGGATTGCAGGCATCAGTTTGATGGGATATTCATTGCCTTACCTGAAATCGATCAG
CGTTTATGTTATTGTATTTGTTTTGATTTTATGGATGATTTATTTTGTAAAAATAAAAACATGCAGCGAAAATATATCCT
TTAAAGCAGTTCTAATCGCAAGTTCAACATTTGTTATGTTGATACTTGGTGATCTATACACAGATCATGCCTTGACTGAA
CATCTTAAATATAAAGAAATGACGTCAAGAAGGGCATCTGAAGTCATCTATATTCGAAAAATCGGAGAAAGTACAGAACA
CGGAATTAAGCAGCCTATTGAAATTTTATCTCAAAATAAACCTACTGTTATATGGCTAGCTTATATTGATGATCAGCTTT
TGGAAAATATGCAGATTAACAATAATAGCTTAGCGCTAGGACAATATTATCAGGTACAGGGAATCGTGAAGCCTGTGCAT
GGTTATGCGAATGCAGGAGGATTCGATCAGGAAAAGTGGTTTGTTCAGCAAAACTGGATGTCAGGCTTTCAAGTCCAACA
GATTCAGCCCTTATCGATGCAACAAGTTTATGGTTTGGGTTTTCAGCAACATCTCAAACAGCAAAACAATCTCTGGCACA
AATTTGGTCTAAATATTGAGCAATTGCGACTGGATTTTCGTATTCAATTACTACAGCAACCCCTGAAATATGAAGCATTA
ATGCTGGCGCTGTTGACAGGTGATCGTAGTTTATTGGATAAAAATACGGAACAAATGTTTCAGCGCTTTGGTATTTCACA
TTTATTGGCGATCTCTGGTCCACATGTACTCATCTTGGCGGCATTATTTACATGGCTACTAAGCTCCATAATCCATAAAT
ACCAGCCCACACTTTATTTAAGATTTCCCAGAAAAATTTTGATGATTGTGCCATTTTGTAGTTGTGTTTTTATTTATACC
GCATTTGTGGGCTTTGAAATTCCAGCATTACGCACCTTACTATTCACCCTGATTGCCAGTTTATTCTTAATCTTTAAACA
TGAAATTCGACCGTTTAATTTGCTGTTATATACCGCAAGTCTGAGTGTATGGATTGATCCATTGAGTATTTTATCGGCTG
CTTTTTGGTTATCTTATGGTGCTTGTTTTATTTTATTAAATATTTATCAATCCATGCAGCATCAGTCAGATTCAGTACCT
AATCTAAGGCAAAAAATCTGGAAAAACAGCAAAATATTGGTTCAATCGCAATGGAAAATTTTTATTGCTTTATGTCCACT
GGTGCTTATATTTTTTAAACAGCTGTCTTGGATCGCGCCGATTACCAATCTGATTGTGATCCCATTTTTAGGTGGTATGA
TCGTGCCACTGGGCATTATTGCAGCTTGTATCTGTTTGCTCATTCCGTCTTTGGGACAGCTACTTTTCCATATCAACGAC
TTATTAATAGGTCTTTTATTTTTTATTTTAAACGGTCTGGATCATCTTTTTCAGCCTGAGCTGTACGCATTTGCTTTAAC
TCCCATGCTTTTGCTCAGTTTTAGTCTCGGTATTGTGTTGTTATTTTTACCTAGAGGTAGTATTCCAAAGTCATGGGCAG
TGTTATGTATTTGTCCCATATTTTTATTGGCATGGATTAAACGGGATACACAGATATCGGTGATTGATGTAGGGCAAGGG
CAGTCTGTTTTTGTACAAGATGCATCTCTGCGTATGCTGATTGATACGGGCGGTTATTATGATGAAAGCAAATTTAGTAT
TGGTCAAAATGTTGTGGTTCCTTATTTAAAATCTCAAGGGGTTGCACAACTTGATCGTATTTTACTTTCTCACTTGGATC
AGGATCATAGTGGAGCGCTTGCTGCTGTTTTGCAGCAAACCAGAGTCAAGCATTTAATGGCCAATGAAACCCTACCACAG
CCCACATTATCGTTACAAACAGATGCTTCTTTTTCCAGATGTCATACGGGTCAAACATGGCAGACTTCAGAGATACGCTT
ACAAATACTTTCTCCTGAACCTGTTGATGATCAAACAATTCAATACAACCGAAATGAATATTCCTGCGTGGTCTATCTGG
AGCTGTTGAAGGCGAATGGTTTACGTCGATTTTTAATTATGGGCGATGCTGGCTGGGAGACCGAATATCAAATTTTGCAT
AAGTATCCCGACTTAAAAGTTGATGTTTTGGTGTTGGGACATCATGGTAGCAAGCACAGCTCATCTTATGATTTTTTAAA
ACATTATCAGCCTAAAATCGCGGTTGCATCCGTTGGATATACCAATCGTTATGGACATCCGAGTTTAGAAACCTTATCTA
GATTAGATGCTTTACATATTCCGCTTTATACCACGATCCAGTCAGGAACGATCACGTTTAAGGTGGAAGATCATGAAGTA
AAACTGGAACAATATCGAAATACAGTTAAGTGGCTGAATCTGTACGAGTCATATTAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(244-525)

Metallo-beta-lactamase superfamily (Lactamase_B)

(556-641)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/comEC Acinetobacter baylyi ADP1

53.506

99.389

0.532
  comA/comEC Acinetobacter baumannii strain A118

48.771

99.511

0.485
  comA/comEC Acinetobacter baumannii D1279779

48.403

99.511

0.482