Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I6I62_RS14315 Genome accession   NZ_CP068170
Coordinates   2950338..2950820 (+) Length   160 a.a.
NCBI ID   WP_003535713.1    Uniprot ID   A0A3E3AIM6
Organism   Thomasclavelia ramosa strain FDAARGOS_1105     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2945338..2955820
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I62_RS14290 (I6I62_14290) - 2946261..2946839 (-) 579 WP_003535700.1 DedA family protein -
  I6I62_RS14295 (I6I62_14295) - 2946811..2947716 (-) 906 WP_050754560.1 Na/Pi cotransporter family protein -
  I6I62_RS14300 (I6I62_14300) ispD 2947885..2948520 (+) 636 WP_003535706.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  I6I62_RS14305 (I6I62_14305) - 2948521..2949906 (+) 1386 WP_008792600.1 glycoside hydrolase family 3 N-terminal domain-containing protein -
  I6I62_RS14310 (I6I62_14310) rpsF 2950041..2950322 (+) 282 WP_003535710.1 30S ribosomal protein S6 -
  I6I62_RS14315 (I6I62_14315) ssb 2950338..2950820 (+) 483 WP_003535713.1 single-stranded DNA-binding protein Machinery gene
  I6I62_RS14320 (I6I62_14320) rpsR 2950838..2951068 (+) 231 WP_003535715.1 30S ribosomal protein S18 -
  I6I62_RS14325 (I6I62_14325) - 2951432..2952199 (+) 768 WP_008792601.1 DeoR/GlpR family DNA-binding transcription regulator -
  I6I62_RS14330 (I6I62_14330) deoC 2952403..2953083 (+) 681 WP_008792602.1 deoxyribose-phosphate aldolase -
  I6I62_RS14335 (I6I62_14335) - 2953135..2953935 (+) 801 WP_003535718.1 transketolase -
  I6I62_RS14340 (I6I62_14340) - 2953937..2954860 (+) 924 WP_118232859.1 transketolase family protein -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 18680.80 Da        Isoelectric Point: 4.6896

>NTDB_id=527751 I6I62_RS14315 WP_003535713.1 2950338..2950820(+) (ssb) [Thomasclavelia ramosa strain FDAARGOS_1105]
MINRVVLVGRMTRDPELRRTPQGDAVTSFTLAVNRNFTSRDGQQQADFINCVVWRKPAENVERYCSKGSLVGVEGRIQTR
SYDNTQGQKVYVVEVICDSVQFLETRAARERQPQPQQQMQQPYQQPQNNDNFYDMKTVELEKEFDNSINTYDIMEDDIQF

Nucleotide


Download         Length: 483 bp        

>NTDB_id=527751 I6I62_RS14315 WP_003535713.1 2950338..2950820(+) (ssb) [Thomasclavelia ramosa strain FDAARGOS_1105]
ATGATTAATAGAGTAGTCCTAGTAGGACGAATGACTAGAGATCCTGAACTTAGAAGAACACCACAAGGTGATGCGGTTAC
TTCTTTTACTTTAGCGGTAAATCGTAATTTTACAAGCAGAGATGGTCAACAACAAGCAGATTTTATTAATTGTGTTGTGT
GGCGTAAACCTGCTGAAAATGTTGAGAGATATTGTTCTAAGGGAAGTTTAGTTGGTGTTGAAGGAAGAATCCAAACACGT
AGCTATGACAATACTCAAGGTCAAAAGGTATATGTTGTAGAAGTTATTTGTGATAGTGTGCAATTCTTAGAAACAAGAGC
TGCTCGTGAAAGGCAACCACAGCCACAACAACAAATGCAACAACCGTACCAACAACCACAAAATAATGATAATTTCTATG
ATATGAAAACAGTTGAATTAGAAAAAGAATTTGATAATTCAATTAATACATATGATATCATGGAAGATGATATTCAGTTT
TAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3E3AIM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

46.199

100

0.494
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.094

66.25

0.431
  ssbB Bacillus subtilis subsp. subtilis str. 168

53.39

73.75

0.394