Detailed information NTG0527612

Bioinformatically predicted

Overview

• Name: ruvA
• Type: Machinery gene
• Locus tag: BAJP3042_RS13115
• Genome accession: NZ_CP082243
• Coordinates: 2715822..2716427 (-)
• Length: 201 a.a.
• NCBI ID: WP_007612848.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain JP3042
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2710822..2721427

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BAJP3042_RS13080 (BAJP3042_13080)	-	2710835..2711491 (-)	657	WP_003152699.1	DUF421 domain-containing protein	-
BAJP3042_RS13085 (BAJP3042_13085)	-	2711658..2712044 (+)	387	WP_003152697.1	TIGR04086 family membrane protein	-
BAJP3042_RS13090 (BAJP3042_13090)	yajC	2712096..2712356 (-)	261	WP_007408187.1	preprotein translocase subunit YajC	-
BAJP3042_RS13095 (BAJP3042_13095)	tgt	2712387..2713532 (-)	1146	WP_222835215.1	tRNA guanosine(34) transglycosylase Tgt	-
BAJP3042_RS13100 (BAJP3042_13100)	queA	2713560..2714588 (-)	1029	WP_003152692.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
BAJP3042_RS13105 (BAJP3042_13105)	-	2714614..2714814 (-)	201	WP_003152687.1	DUF2905 domain-containing protein	-
BAJP3042_RS13110 (BAJP3042_13110)	ruvB	2714807..2715811 (-)	1005	WP_007408185.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
BAJP3042_RS13115 (BAJP3042_13115)	ruvA	2715822..2716427 (-)	606	WP_007612848.1	Holliday junction branch migration protein RuvA	Machinery gene
BAJP3042_RS13120 (BAJP3042_13120)	-	2716563..2717072 (-)	510	WP_012118093.1	intercompartmental signaling factor BofC	-
BAJP3042_RS20115	-	2717205..2717324 (-)	120	WP_007612850.1	hypothetical protein	-
BAJP3042_RS13130 (BAJP3042_13130)	-	2717457..2718050 (-)	594	WP_014721606.1	YhcN/YlaJ family sporulation lipoprotein	-
BAJP3042_RS13135 (BAJP3042_13135)	safA	2718198..2719388 (-)	1191	WP_014418537.1	SafA/ExsA family spore coat assembly protein	-
BAJP3042_RS13140 (BAJP3042_13140)	nadA	2719516..2720619 (-)	1104	WP_222835216.1	quinolinate synthase NadA	-

Sequence

Protein

• Length: 201 a.a.
• Molecular weight: 22430.85 Da
• Isoelectric Point: 5.1597

>NTDB_id=527612 BAJP3042_RS13115 WP_007612848.1 2715822..2716427(-) (ruvA) [Bacillus amyloliquefaciens strain JP3042]
MIEFVKGTIDYVSPQYIVIENGGIGYQVFTPNPFIYKVSNQETIFTYHHIKEDAFSLYGFSTREEKALFTKLLNVTGIGP
KGALAILGSGDPGAVIEAIEQEDEAFLVKFPGVGKKTARQIILDLKGKLADVVPEMIDNLFNHEARIEKQEAETALDEAL
EALRVLGYAEKEIKKVLPHLKEETSLSTDQYVKKALQKLLK

Nucleotide

• Length: 606 bp

>NTDB_id=527612 BAJP3042_RS13115 WP_007612848.1 2715822..2716427(-) (ruvA) [Bacillus amyloliquefaciens strain JP3042]
GTGATTGAATTCGTGAAGGGGACGATTGATTATGTATCTCCCCAATACATCGTGATTGAAAACGGCGGAATCGGCTATCA
GGTCTTCACTCCGAATCCGTTTATTTATAAGGTAAGCAATCAAGAGACCATTTTTACGTATCATCATATAAAAGAAGACG
CCTTTTCTTTGTACGGTTTTTCAACCCGGGAAGAAAAAGCGCTTTTCACAAAGCTGCTGAACGTCACCGGCATCGGGCCT
AAAGGGGCGCTCGCCATCCTCGGTTCCGGTGATCCCGGAGCCGTCATCGAAGCGATCGAACAGGAAGACGAAGCCTTTTT
GGTGAAATTTCCGGGTGTGGGCAAAAAAACGGCGCGGCAGATTATTCTTGATCTGAAAGGCAAACTGGCCGACGTCGTGC
CTGAAATGATTGACAACCTGTTCAATCATGAAGCGCGCATTGAAAAACAAGAGGCTGAAACGGCGCTTGACGAGGCGCTT
GAAGCGCTCCGGGTTCTCGGCTACGCCGAAAAAGAAATTAAAAAAGTGCTTCCTCACTTAAAAGAGGAAACGTCGCTTTC
AACAGATCAATATGTGAAAAAAGCATTGCAAAAATTATTAAAGTAA

Domains

Predicted by InterProScan.

• RuvA N terminal domain (RuvA_N) (1-59)

• Helix-hairpin-helix domain (HHH_5) (69-126)

• RuvA, C-terminal domain (RuvA_C) (155-199)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvA	Bacillus subtilis subsp. subtilis str. 168	92.537	100	0.925
ruvA	Streptococcus pneumoniae R6	39.806	100	0.408
ruvA	Streptococcus pneumoniae D39	39.806	100	0.408
ruvA	Streptococcus pneumoniae TIGR4	39.806	100	0.408