Detailed information    

insolico Bioinformatically predicted

Overview


Name   cinA   Type   Machinery gene
Locus tag   I6I41_RS02630 Genome accession   NZ_CP068135
Coordinates   487361..488599 (+) Length   412 a.a.
NCBI ID   WP_006928395.1    Uniprot ID   -
Organism   Bacillus cereus strain FDAARGOS_1084     
Function   unknown (predicted from homology)   
Unclear

Genomic Context


Location: 482361..493599
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I41_RS02600 (I6I41_02600) yfmH 482401..483687 (+) 1287 WP_000411980.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  I6I41_RS02605 (I6I41_02605) ymfI 483788..484501 (+) 714 WP_000759604.1 elongation factor P 5-aminopentanone reductase -
  I6I41_RS02610 (I6I41_02610) - 484577..484825 (+) 249 WP_000114450.1 DUF3243 domain-containing protein -
  I6I41_RS02615 (I6I41_02615) - 484964..485749 (+) 786 WP_000574107.1 DUF3388 domain-containing protein -
  I6I41_RS02620 (I6I41_02620) - 485771..486697 (+) 927 WP_000137459.1 helix-turn-helix domain-containing protein -
  I6I41_RS02625 (I6I41_02625) pgsA 486762..487340 (+) 579 WP_001052967.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  I6I41_RS02630 (I6I41_02630) cinA 487361..488599 (+) 1239 WP_006928395.1 competence/damage-inducible protein CinA Machinery gene
  I6I41_RS02635 (I6I41_02635) recA 488743..489774 (+) 1032 WP_001283860.1 recombinase RecA Machinery gene
  I6I41_RS02640 (I6I41_02640) rny 490257..491819 (+) 1563 WP_000204911.1 ribonuclease Y -
  I6I41_RS02645 (I6I41_02645) - 491982..492776 (+) 795 WP_001221095.1 TIGR00282 family metallophosphoesterase -
  I6I41_RS02650 (I6I41_02650) spoVS 492926..493186 (+) 261 WP_000404341.1 stage V sporulation protein SpoVS -

Sequence


Protein


Download         Length: 412 a.a.        Molecular weight: 45535.86 Da        Isoelectric Point: 5.2258

>NTDB_id=527381 I6I41_RS02630 WP_006928395.1 487361..488599(+) (cinA) [Bacillus cereus strain FDAARGOS_1084]
MNAEIIAVGTELLLGQIANTNAQFLSEKLASIGINVYYHTVVGDNNKRLQKAIEAAEERADILIFTGGLGPTKDDLTKET
IATSLDEELVYDEKALALISNYFKRTGREFTENNKKQALVLNGATVFANDHGMAPGMGVNKNGKVYILLPGPPKEMKPMY
VSYVEPFLRNFTTGENIYSRVLRFFGIGESQLEVKVQDLIDGQTNPTIAPLANDGEVTLRLTAKHQNVSEAEKLIQYVED
LILERVGEFFYGYDQEFLHYKAIELLKRKGLTLACAESLTGGLFGNQVTENAGVSSVFKGGVICYHNDVKQHVLRVPEEV
LHTDGAVSKECARYLAENVKDVLKADIGISFTGVAGPDASEQKEPGTVFVGLSIKDEPTVVFPLNLSGSRQQIRERTAKY
GFYHLYKKLEEI

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=527381 I6I41_RS02630 WP_006928395.1 487361..488599(+) (cinA) [Bacillus cereus strain FDAARGOS_1084]
ATGAATGCTGAGATTATTGCGGTTGGAACTGAATTATTACTTGGACAAATTGCAAATACAAATGCCCAGTTTTTATCTGA
AAAGTTAGCTTCAATCGGAATTAACGTGTACTATCATACTGTTGTTGGTGATAATAATAAGCGATTGCAAAAGGCGATTG
AAGCTGCGGAAGAACGTGCTGATATACTTATTTTCACAGGTGGATTAGGACCGACAAAAGATGATTTAACGAAAGAAACG
ATAGCTACTAGTTTAGATGAAGAGCTTGTGTATGATGAAAAGGCATTAGCCTTAATAAGTAATTACTTTAAGCGTACAGG
CCGTGAATTTACGGAGAATAATAAAAAGCAAGCGCTCGTTTTAAATGGAGCAACAGTATTTGCAAATGACCACGGTATGG
CGCCGGGTATGGGGGTAAATAAGAACGGAAAAGTTTATATTTTATTACCAGGGCCACCAAAAGAGATGAAACCAATGTAT
GTAAGTTACGTAGAGCCTTTTTTACGTAATTTTACAACAGGAGAAAACATTTATTCTCGTGTGCTTCGTTTCTTCGGTAT
TGGGGAGTCCCAATTAGAGGTGAAAGTTCAAGATTTAATTGATGGACAAACAAACCCAACAATTGCCCCATTAGCAAATG
ATGGAGAAGTGACATTACGTTTAACCGCTAAGCATCAAAATGTTAGCGAAGCGGAGAAACTAATTCAATATGTGGAAGAT
TTGATTTTAGAAAGAGTAGGAGAATTTTTCTACGGATATGACCAAGAATTTTTGCATTATAAGGCAATCGAGTTATTGAA
GAGAAAAGGGTTAACTTTAGCGTGTGCAGAAAGTTTAACAGGTGGTCTTTTTGGAAATCAAGTAACTGAAAACGCTGGTG
TTTCTTCTGTGTTTAAAGGCGGTGTCATTTGTTATCATAATGATGTGAAGCAACATGTTTTACGTGTGCCTGAAGAAGTG
TTGCATACTGATGGTGCAGTTAGTAAAGAATGTGCTCGTTATCTTGCTGAAAATGTTAAGGATGTACTAAAAGCGGATAT
CGGAATTAGTTTCACTGGTGTAGCAGGGCCAGATGCTTCAGAACAGAAAGAACCAGGAACAGTATTTGTTGGGCTTTCTA
TTAAGGATGAACCAACTGTAGTCTTTCCTCTTAATTTAAGCGGAAGTCGTCAACAAATTAGAGAACGAACAGCAAAATAT
GGATTTTATCATTTATATAAAAAGCTAGAAGAGATATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.252

100

0.583

  cinA Streptococcus pneumoniae TIGR4

46.778

100

0.476

  cinA Streptococcus mitis SK321

46.539

100

0.473

  cinA Streptococcus pneumoniae Rx1

46.301

100

0.471

  cinA Streptococcus pneumoniae R6

46.301

100

0.471

  cinA Streptococcus pneumoniae D39

46.062

100

0.468

  cinA Streptococcus mitis NCTC 12261

46.062

100

0.468

  cinA Streptococcus mutans UA159

45.32

98.544

0.447

  cinA Streptococcus suis isolate S10

40.584

91.505

0.371