Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I6I78_RS01840 Genome accession   NZ_CP068128
Coordinates   375244..375768 (+) Length   174 a.a.
NCBI ID   WP_005226365.1    Uniprot ID   A0A505IXH5
Organism   Enterococcus casseliflavus strain FDAARGOS_1121     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 367441..382219 375244..375768 within 0


Gene organization within MGE regions


Location: 367441..382219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I78_RS01810 (I6I78_01810) dnaN 367441..368571 (+) 1131 WP_005226354.1 DNA polymerase III subunit beta -
  I6I78_RS01815 (I6I78_01815) yaaA 368794..369033 (+) 240 WP_077453248.1 S4 domain-containing protein YaaA -
  I6I78_RS01820 (I6I78_01820) recF 369020..370132 (+) 1113 WP_077453246.1 DNA replication/repair protein RecF -
  I6I78_RS01825 (I6I78_01825) gyrB 370138..372087 (+) 1950 WP_005226359.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  I6I78_RS01830 (I6I78_01830) gyrA 372111..374636 (+) 2526 WP_010748472.1 DNA gyrase subunit A -
  I6I78_RS01835 (I6I78_01835) rpsF 374901..375200 (+) 300 WP_005226363.1 30S ribosomal protein S6 -
  I6I78_RS01840 (I6I78_01840) ssb 375244..375768 (+) 525 WP_005226365.1 single-stranded DNA-binding protein Machinery gene
  I6I78_RS01845 (I6I78_01845) rpsR 375792..376028 (+) 237 WP_005226367.1 30S ribosomal protein S18 -
  I6I78_RS01850 (I6I78_01850) - 376269..377717 (+) 1449 WP_201705545.1 DHH family phosphoesterase -
  I6I78_RS01855 (I6I78_01855) rplI 377733..378185 (+) 453 WP_005226371.1 50S ribosomal protein L9 -
  I6I78_RS01860 (I6I78_01860) dnaB 378293..379663 (+) 1371 WP_005226374.1 replicative DNA helicase -
  I6I78_RS01865 (I6I78_01865) - 379911..381203 (+) 1293 WP_005232916.1 adenylosuccinate synthase -
  I6I78_RS01870 (I6I78_01870) - 381344..382219 (+) 876 WP_201705546.1 DegV family protein -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19149.65 Da        Isoelectric Point: 4.7093

>NTDB_id=527307 I6I78_RS01840 WP_005226365.1 375244..375768(+) (ssb) [Enterococcus casseliflavus strain FDAARGOS_1121]
MINNVVLVGRLTKDPDLRYTSNGTGVATFTLAVNRNFTNQSGEREADFINCVIWRKPAETLANYARKGTLLGVTGRIQTR
SYDNQQGQRVYVTEVVADNFQLLESRNASEQRRTTDSGSGSNNTYNSNSSSGFGNNNSNQTQSSQPSGMPNFDRDNSDPF
GNSSIDISDDDLPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=527307 I6I78_RS01840 WP_005226365.1 375244..375768(+) (ssb) [Enterococcus casseliflavus strain FDAARGOS_1121]
TTGATTAATAATGTTGTACTAGTAGGAAGACTAACCAAAGATCCTGATTTACGTTACACTTCTAATGGCACTGGTGTCGC
AACCTTTACCTTGGCGGTAAACCGCAATTTTACCAACCAAAGTGGAGAGCGCGAAGCTGATTTCATCAACTGTGTTATTT
GGAGAAAACCAGCGGAAACATTAGCAAACTATGCACGCAAAGGAACTTTATTAGGGGTTACTGGACGTATTCAAACCCGT
TCATACGACAACCAACAAGGCCAACGTGTTTATGTAACAGAAGTCGTTGCTGACAACTTCCAATTATTAGAGTCGCGGAA
TGCTTCCGAGCAAAGACGCACAACTGATAGCGGATCTGGCAGTAACAATACGTATAACTCAAACAGTTCTTCTGGATTTG
GTAACAATAACTCAAATCAAACTCAATCCTCTCAACCATCAGGAATGCCTAATTTTGATCGAGACAACTCCGATCCATTC
GGAAACTCATCAATCGACATTTCAGACGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A505IXH5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

60.795

100

0.615
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.866

100

0.575
  ssbB Bacillus subtilis subsp. subtilis str. 168

63.208

60.92

0.385