Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I6I79_RS05010 Genome accession   NZ_CP068126
Coordinates   879510..880034 (+) Length   174 a.a.
NCBI ID   WP_005232920.1    Uniprot ID   -
Organism   Enterococcus casseliflavus strain FDAARGOS_1122     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 874510..885034
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I79_RS05000 (I6I79_05000) gyrA 876378..878903 (+) 2526 WP_016608933.1 DNA gyrase subunit A -
  I6I79_RS05005 (I6I79_05005) rpsF 879167..879466 (+) 300 WP_005226363.1 30S ribosomal protein S6 -
  I6I79_RS05010 (I6I79_05010) ssb 879510..880034 (+) 525 WP_005232920.1 single-stranded DNA-binding protein Machinery gene
  I6I79_RS05015 (I6I79_05015) rpsR 880058..880294 (+) 237 WP_005226367.1 30S ribosomal protein S18 -
  I6I79_RS05020 (I6I79_05020) - 880534..881982 (+) 1449 WP_005232918.1 DHH family phosphoesterase -
  I6I79_RS05025 (I6I79_05025) rplI 881998..882450 (+) 453 WP_005226371.1 50S ribosomal protein L9 -
  I6I79_RS05030 (I6I79_05030) dnaB 882559..883929 (+) 1371 WP_005226374.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19122.62 Da        Isoelectric Point: 4.7093

>NTDB_id=527275 I6I79_RS05010 WP_005232920.1 879510..880034(+) (ssb) [Enterococcus casseliflavus strain FDAARGOS_1122]
MINNVVLVGRLTKDPDLRYTSNGTGVATFTLAVNRNFTNQSGEREADFINCVIWRKPAETLANYARKGTLLGVTGRIQTR
SYDNQQGQRVYVTEVVADNFQLLESRNASEQRRTTDSGSGSSNTYNSNSSSGFGNNNSNQTQSSQPSGMPNFDRDNSDPF
GNSSIDISDDDLPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=527275 I6I79_RS05010 WP_005232920.1 879510..880034(+) (ssb) [Enterococcus casseliflavus strain FDAARGOS_1122]
TTGATTAATAATGTTGTACTAGTAGGAAGACTAACCAAAGATCCTGATTTACGTTACACTTCTAATGGCACTGGTGTCGC
AACCTTTACCTTGGCGGTAAATCGCAATTTTACCAACCAAAGTGGAGAGCGCGAAGCTGATTTCATCAACTGTGTTATTT
GGAGAAAACCAGCGGAAACATTAGCAAACTATGCACGCAAAGGAACTTTATTAGGGGTTACTGGACGTATTCAAACCCGT
TCATACGACAACCAACAAGGCCAACGTGTTTATGTAACAGAAGTCGTTGCTGACAACTTCCAATTATTAGAATCGCGAAA
TGCTTCCGAGCAAAGACGCACAACTGATAGCGGATCTGGCAGCAGCAATACGTATAACTCAAATAGTTCTTCTGGATTTG
GTAACAATAACTCAAATCAAACTCAATCCTCTCAACCATCAGGAATGCCTAATTTTGATCGAGACAACTCCGATCCATTC
GGAAACTCATCAATCGACATTTCAGACGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

61.364

100

0.621
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.866

100

0.575
  ssbB Bacillus subtilis subsp. subtilis str. 168

63.208

60.92

0.385