Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   K6972_RS02805 Genome accession   NZ_CP082203
Coordinates   541824..542468 (+) Length   214 a.a.
NCBI ID   WP_024385031.1    Uniprot ID   -
Organism   Streptococcus suis strain NJ3     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 536824..547468
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6972_RS02795 (K6972_02795) - 538765..540174 (+) 1410 WP_222812826.1 collagen binding domain-containing protein -
  K6972_RS02800 (K6972_02800) - 540953..541660 (-) 708 WP_205028600.1 CPBP family intramembrane glutamic endopeptidase -
  K6972_RS02805 (K6972_02805) scnR 541824..542468 (+) 645 WP_024385031.1 response regulator transcription factor Regulator
  K6972_RS02810 (K6972_02810) - 542471..543829 (+) 1359 WP_222812828.1 HAMP domain-containing sensor histidine kinase -
  K6972_RS02815 (K6972_02815) - 544122..544667 (+) 546 WP_024385029.1 isoprenylcysteine carboxyl methyltransferase family protein -
  K6972_RS02820 (K6972_02820) - 544725..547373 (+) 2649 WP_222759895.1 LPXTG cell wall anchor domain-containing protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24564.67 Da        Isoelectric Point: 4.8919

>NTDB_id=527133 K6972_RS02805 WP_024385031.1 541824..542468(+) (scnR) [Streptococcus suis strain NJ3]
MAKIMVVEDDIVISQVVCEFLKDHGYEVTHISDGKIALETFREESFDLIVLDIMIPSMTGLEVLQEIRKTSKIPILMLTA
MDDEYTQLVSFNQLISDYVVKPFSPIILVKRIENILRGEGDIIEAADIQIHPSSGAVYMAEEEVQLTKKEYEILLYLAKR
RGKIVNRDHLMLGIWGYTELDSRVLDNHIKNLRKKLPSLPLRTVIGRGYQVEEF

Nucleotide


Download         Length: 645 bp        

>NTDB_id=527133 K6972_RS02805 WP_024385031.1 541824..542468(+) (scnR) [Streptococcus suis strain NJ3]
ATGGCGAAAATTATGGTTGTAGAAGATGATATTGTTATCAGTCAAGTAGTTTGTGAATTTCTAAAGGATCACGGCTACGA
AGTGACCCATATTTCCGACGGAAAAATTGCACTTGAAACATTTCGAGAAGAATCATTTGATTTGATTGTATTGGACATTA
TGATACCGTCCATGACAGGATTGGAAGTCCTACAGGAGATTCGTAAGACATCAAAAATTCCAATTCTTATGTTAACGGCA
ATGGATGACGAATACACACAATTGGTTAGCTTCAATCAACTGATTAGTGACTACGTTGTAAAACCTTTTTCGCCGATTAT
TCTTGTGAAACGCATTGAAAATATTTTGCGTGGTGAAGGTGATATTATAGAAGCAGCCGACATCCAAATCCATCCGTCCA
GTGGAGCGGTTTATATGGCAGAAGAAGAAGTACAATTAACGAAAAAAGAATACGAGATTTTACTGTACTTGGCAAAACGA
CGTGGAAAAATTGTCAATCGTGATCATCTAATGCTGGGAATTTGGGGCTATACAGAACTGGATAGCCGAGTTTTGGACAA
TCATATCAAGAATCTACGTAAGAAGTTACCATCTCTTCCTTTACGAACGGTAATTGGTCGAGGTTATCAGGTTGAGGAAT
TCTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-112)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(142-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

38.739

100

0.402
  micA Streptococcus pneumoniae Cp1015

37.281

100

0.397
  vicR Streptococcus mutans UA159

35.47

100

0.388