Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I6I90_RS06115 Genome accession   NZ_CP068106
Coordinates   1240919..1241440 (+) Length   173 a.a.
NCBI ID   WP_002829316.1    Uniprot ID   A0AAN5YAY2
Organism   Pediococcus acidilactici strain FDAARGOS_1133     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1235919..1246440
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I90_RS06105 (I6I90_06105) gyrA 1237890..1240409 (+) 2520 WP_126130526.1 DNA gyrase subunit A -
  I6I90_RS06110 (I6I90_06110) rpsF 1240595..1240882 (+) 288 WP_002829317.1 30S ribosomal protein S6 -
  I6I90_RS06115 (I6I90_06115) ssb 1240919..1241440 (+) 522 WP_002829316.1 single-stranded DNA-binding protein Machinery gene
  I6I90_RS06120 (I6I90_06120) rpsR 1241470..1241706 (+) 237 WP_002829315.1 30S ribosomal protein S18 -
  I6I90_RS06125 (I6I90_06125) - 1241919..1243916 (+) 1998 WP_002830767.1 DHH family phosphoesterase -
  I6I90_RS06130 (I6I90_06130) rplI 1243922..1244374 (+) 453 WP_002830768.1 50S ribosomal protein L9 -
  I6I90_RS06135 (I6I90_06135) dnaB 1244424..1245821 (+) 1398 WP_002829312.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18874.39 Da        Isoelectric Point: 4.6207

>NTDB_id=527131 I6I90_RS06115 WP_002829316.1 1240919..1241440(+) (ssb) [Pediococcus acidilactici strain FDAARGOS_1133]
MINRAVLVGRLTRDPELRYTSSGAAVVSFTVAVNRQFTNSQGEREADFINCVMWRKAAENFANFTRKGSLVGIDGRIQTR
SYENQQGQRVYVTEVVADNFSLLESRSASERRQENEGFNNGQSAPSQSSAGNPFDSGQANNNGAASQPNNSNPNDPFANG
GQSIDISDDDLPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=527131 I6I90_RS06115 WP_002829316.1 1240919..1241440(+) (ssb) [Pediococcus acidilactici strain FDAARGOS_1133]
ATGATTAATCGTGCCGTACTAGTTGGACGTTTAACAAGAGATCCTGAACTACGATATACAAGTAGTGGCGCTGCCGTAGT
TAGTTTTACCGTGGCGGTTAACCGTCAGTTTACTAACTCACAGGGTGAACGCGAAGCGGATTTCATCAACTGTGTAATGT
GGCGGAAAGCGGCGGAAAACTTCGCCAACTTCACGCGCAAGGGCTCTCTAGTAGGTATCGACGGTCGGATCCAAACCCGT
TCGTACGAAAACCAACAAGGACAACGAGTATACGTTACCGAAGTTGTTGCGGATAACTTCTCACTTCTTGAATCCCGTTC
GGCTTCCGAACGCCGTCAAGAAAATGAAGGCTTCAACAACGGTCAATCTGCCCCTTCACAATCATCTGCTGGAAATCCTT
TTGACAGTGGTCAAGCGAATAACAATGGTGCTGCATCGCAGCCTAACAATTCGAACCCGAACGATCCGTTTGCAAATGGC
GGACAGTCAATTGATATTTCTGACGATGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

69.318

100

0.705
  ssbA Bacillus subtilis subsp. subtilis str. 168

60

100

0.607
  ssbB Bacillus subtilis subsp. subtilis str. 168

61.321

61.272

0.376