Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | I6I91_RS02695 | Genome accession | NZ_CP068104 |
| Coordinates | 524375..524848 (-) | Length | 157 a.a. |
| NCBI ID | WP_201626929.1 | Uniprot ID | - |
| Organism | Pediococcus pentosaceus strain FDAARGOS_1134 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 492949..536562 | 524375..524848 | within | 0 |
Gene organization within MGE regions
Location: 492949..536562
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6I91_RS02505 (I6I91_02505) | - | 492949..493593 (+) | 645 | WP_201626884.1 | lysophospholipid acyltransferase family protein | - |
| I6I91_RS02510 (I6I91_02510) | - | 493605..493826 (-) | 222 | WP_002833599.1 | YneF family protein | - |
| I6I91_RS02515 (I6I91_02515) | - | 493897..494145 (-) | 249 | WP_002833598.1 | DUF896 domain-containing protein | - |
| I6I91_RS02520 (I6I91_02520) | lexA | 494279..494908 (+) | 630 | WP_002833597.1 | transcriptional repressor LexA | - |
| I6I91_RS02525 (I6I91_02525) | - | 494987..495586 (+) | 600 | WP_011673312.1 | hypothetical protein | - |
| I6I91_RS02530 (I6I91_02530) | - | 495626..496792 (-) | 1167 | WP_023440307.1 | hydroxymethylglutaryl-CoA synthase | - |
| I6I91_RS02535 (I6I91_02535) | - | 496953..498329 (-) | 1377 | WP_201626886.1 | amino acid permease | - |
| I6I91_RS02540 (I6I91_02540) | - | 499457..500575 (-) | 1119 | WP_236593420.1 | N-acetylmuramoyl-L-alanine amidase | - |
| I6I91_RS02545 (I6I91_02545) | - | 500559..501095 (-) | 537 | WP_201626895.1 | phage holin family protein | - |
| I6I91_RS02550 (I6I91_02550) | - | 501129..501380 (-) | 252 | WP_201626897.1 | hypothetical protein | - |
| I6I91_RS02555 (I6I91_02555) | - | 501382..501807 (-) | 426 | WP_201626899.1 | hypothetical protein | - |
| I6I91_RS02560 (I6I91_02560) | - | 501797..502036 (-) | 240 | WP_195751034.1 | hypothetical protein | - |
| I6I91_RS02565 (I6I91_02565) | - | 502033..506157 (-) | 4125 | WP_201626900.1 | phage tail protein | - |
| I6I91_RS02570 (I6I91_02570) | - | 506176..507006 (-) | 831 | WP_201626901.1 | phage tail domain-containing protein | - |
| I6I91_RS02575 (I6I91_02575) | - | 507021..510842 (-) | 3822 | WP_201626902.1 | phage tail tape measure protein | - |
| I6I91_RS02580 (I6I91_02580) | - | 510842..511060 (-) | 219 | WP_195751031.1 | hypothetical protein | - |
| I6I91_RS02585 (I6I91_02585) | - | 511150..511599 (-) | 450 | WP_195751030.1 | tail assembly chaperone | - |
| I6I91_RS02590 (I6I91_02590) | - | 511678..511968 (-) | 291 | WP_201626903.1 | Ig-like domain-containing protein | - |
| I6I91_RS02595 (I6I91_02595) | - | 511928..512524 (-) | 597 | WP_195751028.1 | phage major tail protein, TP901-1 family | - |
| I6I91_RS02600 (I6I91_02600) | - | 512542..512844 (-) | 303 | WP_236593421.1 | hypothetical protein | - |
| I6I91_RS02605 (I6I91_02605) | - | 512903..513259 (-) | 357 | WP_201626904.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| I6I91_RS02610 (I6I91_02610) | - | 513256..513546 (-) | 291 | WP_201626905.1 | hypothetical protein | - |
| I6I91_RS02615 (I6I91_02615) | - | 513546..513884 (-) | 339 | WP_201626907.1 | phage head-tail connector protein | - |
| I6I91_RS02620 (I6I91_02620) | - | 513898..514131 (-) | 234 | WP_236593422.1 | Ig-like domain-containing protein | - |
| I6I91_RS02625 (I6I91_02625) | - | 514182..515039 (-) | 858 | WP_201626909.1 | capsid protein | - |
| I6I91_RS02630 (I6I91_02630) | - | 515052..515627 (-) | 576 | WP_201626911.1 | DUF4355 domain-containing protein | - |
| I6I91_RS08755 | - | 515730..515888 (-) | 159 | WP_195751021.1 | hypothetical protein | - |
| I6I91_RS02635 (I6I91_02635) | - | 515944..516888 (-) | 945 | WP_201626913.1 | minor capsid protein | - |
| I6I91_RS02640 (I6I91_02640) | - | 516872..518467 (-) | 1596 | WP_236593423.1 | phage portal protein | - |
| I6I91_RS02645 (I6I91_02645) | - | 518473..519744 (-) | 1272 | WP_201627087.1 | PBSX family phage terminase large subunit | - |
| I6I91_RS02650 (I6I91_02650) | - | 519737..520078 (-) | 342 | WP_195751017.1 | phBC6A51 family helix-turn-helix protein | - |
| I6I91_RS08760 | - | 520151..520333 (-) | 183 | WP_236593425.1 | hypothetical protein | - |
| I6I91_RS02655 (I6I91_02655) | - | 520345..520743 (-) | 399 | WP_195751015.1 | hypothetical protein | - |
| I6I91_RS02660 (I6I91_02660) | - | 520940..521875 (-) | 936 | WP_195751014.1 | hypothetical protein | - |
| I6I91_RS02665 (I6I91_02665) | - | 521917..522375 (-) | 459 | WP_201626917.1 | hypothetical protein | - |
| I6I91_RS02670 (I6I91_02670) | - | 522453..522743 (-) | 291 | WP_201626919.1 | hypothetical protein | - |
| I6I91_RS02675 (I6I91_02675) | - | 522816..523190 (-) | 375 | WP_201626921.1 | MazG-like family protein | - |
| I6I91_RS02680 (I6I91_02680) | - | 523407..523610 (-) | 204 | WP_201626923.1 | hypothetical protein | - |
| I6I91_RS02685 (I6I91_02685) | - | 523603..523908 (-) | 306 | WP_201626925.1 | hypothetical protein | - |
| I6I91_RS02690 (I6I91_02690) | - | 523905..524363 (-) | 459 | WP_201626927.1 | hypothetical protein | - |
| I6I91_RS02695 (I6I91_02695) | ssb | 524375..524848 (-) | 474 | WP_201626929.1 | single-stranded DNA-binding protein | Machinery gene |
| I6I91_RS02700 (I6I91_02700) | - | 525013..525708 (-) | 696 | WP_201626931.1 | putative HNHc nuclease | - |
| I6I91_RS02705 (I6I91_02705) | - | 525712..526542 (-) | 831 | WP_201626933.1 | helix-turn-helix domain-containing protein | - |
| I6I91_RS02710 (I6I91_02710) | - | 526553..527398 (-) | 846 | WP_236593427.1 | PD-(D/E)XK nuclease-like domain-containing protein | - |
| I6I91_RS02715 (I6I91_02715) | bet | 527358..528125 (-) | 768 | WP_236593429.1 | phage recombination protein Bet | - |
| I6I91_RS08870 | - | 528318..528449 (-) | 132 | WP_256677761.1 | hypothetical protein | - |
| I6I91_RS02720 (I6I91_02720) | - | 528463..528738 (-) | 276 | WP_159251096.1 | helix-turn-helix domain-containing protein | - |
| I6I91_RS02725 (I6I91_02725) | - | 528739..529197 (-) | 459 | WP_236593431.1 | helix-turn-helix transcriptional regulator | - |
| I6I91_RS02730 (I6I91_02730) | - | 529271..529441 (-) | 171 | WP_195748902.1 | hypothetical protein | - |
| I6I91_RS08765 | - | 529475..529693 (-) | 219 | WP_229564764.1 | helix-turn-helix domain-containing protein | - |
| I6I91_RS02740 (I6I91_02740) | - | 529864..530238 (+) | 375 | WP_230491138.1 | helix-turn-helix domain-containing protein | - |
| I6I91_RS02745 (I6I91_02745) | - | 530250..530657 (+) | 408 | WP_195753212.1 | ImmA/IrrE family metallo-endopeptidase | - |
| I6I91_RS08895 (I6I91_02755) | - | 530716..531900 (+) | 1185 | WP_330857698.1 | DUF5067 domain-containing protein | - |
| I6I91_RS02760 (I6I91_02760) | - | 531988..532617 (+) | 630 | WP_201626935.1 | hypothetical protein | - |
| I6I91_RS02765 (I6I91_02765) | - | 532645..533820 (+) | 1176 | WP_201626937.1 | MrcB family domain-containing protein | - |
| I6I91_RS02770 (I6I91_02770) | - | 533899..534390 (+) | 492 | WP_201626939.1 | hypothetical protein | - |
| I6I91_RS02775 (I6I91_02775) | - | 534493..535665 (+) | 1173 | WP_201626941.1 | tyrosine-type recombinase/integrase | - |
| I6I91_RS02780 (I6I91_02780) | fabI | 535804..536562 (-) | 759 | WP_041525505.1 | enoyl-ACP reductase FabI | - |
Sequence
Protein
Download Length: 157 a.a. Molecular weight: 17862.59 Da Isoelectric Point: 4.7512
>NTDB_id=527098 I6I91_RS02695 WP_201626929.1 524375..524848(-) (ssb) [Pediococcus pentosaceus strain FDAARGOS_1134]
MINRIVLVGRLTNDPELKYTGNDVAVAIFTVAVNRQFTNSQGESEADFIRCQMWRKAAENFCNFTRKGSLVGIDGRIQTR
SYENQQGTRVYVTEVVAENFSLLESKNSSQNEQFEQNKPQNNGQNYQNQQNGQSSPSRNPNDPFNSMPDIKDDDLPF
MINRIVLVGRLTNDPELKYTGNDVAVAIFTVAVNRQFTNSQGESEADFIRCQMWRKAAENFCNFTRKGSLVGIDGRIQTR
SYENQQGTRVYVTEVVAENFSLLESKNSSQNEQFEQNKPQNNGQNYQNQQNGQSSPSRNPNDPFNSMPDIKDDDLPF
Nucleotide
Download Length: 474 bp
>NTDB_id=527098 I6I91_RS02695 WP_201626929.1 524375..524848(-) (ssb) [Pediococcus pentosaceus strain FDAARGOS_1134]
ATGATTAATCGAATAGTATTAGTCGGGCGGTTAACCAACGATCCAGAACTAAAATACACAGGCAATGATGTAGCAGTTGC
AATCTTCACAGTAGCCGTTAATCGGCAATTTACTAATTCGCAAGGCGAAAGTGAAGCAGATTTTATTAGATGCCAAATGT
GGCGCAAAGCTGCTGAAAACTTCTGTAACTTCACCCGAAAAGGTTCGCTAGTTGGTATTGATGGACGAATTCAAACTCGC
TCATACGAAAATCAACAAGGAACACGAGTTTACGTTACTGAGGTCGTAGCTGAGAACTTCTCGCTACTTGAGTCCAAAAA
CAGTAGCCAAAATGAACAATTTGAACAGAATAAACCTCAAAATAACGGACAAAATTACCAGAATCAACAAAATGGTCAAT
CATCACCTAGCAGAAATCCTAACGACCCATTTAATAGCATGCCGGATATCAAGGATGATGATTTACCGTTCTAG
ATGATTAATCGAATAGTATTAGTCGGGCGGTTAACCAACGATCCAGAACTAAAATACACAGGCAATGATGTAGCAGTTGC
AATCTTCACAGTAGCCGTTAATCGGCAATTTACTAATTCGCAAGGCGAAAGTGAAGCAGATTTTATTAGATGCCAAATGT
GGCGCAAAGCTGCTGAAAACTTCTGTAACTTCACCCGAAAAGGTTCGCTAGTTGGTATTGATGGACGAATTCAAACTCGC
TCATACGAAAATCAACAAGGAACACGAGTTTACGTTACTGAGGTCGTAGCTGAGAACTTCTCGCTACTTGAGTCCAAAAA
CAGTAGCCAAAATGAACAATTTGAACAGAATAAACCTCAAAATAACGGACAAAATTACCAGAATCAACAAAATGGTCAAT
CATCACCTAGCAGAAATCCTAACGACCCATTTAATAGCATGCCGGATATCAAGGATGATGATTTACCGTTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
56.322 |
100 |
0.624 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
52 |
100 |
0.58 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
56.604 |
67.516 |
0.382 |