Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   K6976_RS02700 Genome accession   NZ_CP082202
Coordinates   541024..541668 (+) Length   214 a.a.
NCBI ID   WP_024385031.1    Uniprot ID   -
Organism   Streptococcus suis strain SS389     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 536024..546668
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6976_RS02690 (K6976_02690) - 537962..539371 (+) 1410 WP_222759893.1 collagen binding domain-containing protein -
  K6976_RS02695 (K6976_02695) - 540153..540860 (-) 708 WP_029694000.1 CPBP family intramembrane glutamic endopeptidase -
  K6976_RS02700 (K6976_02700) scnR 541024..541668 (+) 645 WP_024385031.1 response regulator transcription factor Regulator
  K6976_RS02705 (K6976_02705) - 541671..543029 (+) 1359 WP_202846098.1 HAMP domain-containing sensor histidine kinase -
  K6976_RS02710 (K6976_02710) - 543322..543867 (+) 546 WP_044768645.1 isoprenylcysteine carboxyl methyltransferase family protein -
  K6976_RS02715 (K6976_02715) - 543925..546573 (+) 2649 WP_222759895.1 LPXTG cell wall anchor domain-containing protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24564.67 Da        Isoelectric Point: 4.8919

>NTDB_id=527035 K6976_RS02700 WP_024385031.1 541024..541668(+) (scnR) [Streptococcus suis strain SS389]
MAKIMVVEDDIVISQVVCEFLKDHGYEVTHISDGKIALETFREESFDLIVLDIMIPSMTGLEVLQEIRKTSKIPILMLTA
MDDEYTQLVSFNQLISDYVVKPFSPIILVKRIENILRGEGDIIEAADIQIHPSSGAVYMAEEEVQLTKKEYEILLYLAKR
RGKIVNRDHLMLGIWGYTELDSRVLDNHIKNLRKKLPSLPLRTVIGRGYQVEEF

Nucleotide


Download         Length: 645 bp        

>NTDB_id=527035 K6976_RS02700 WP_024385031.1 541024..541668(+) (scnR) [Streptococcus suis strain SS389]
ATGGCGAAAATTATGGTTGTAGAAGATGATATTGTTATCAGTCAAGTAGTTTGTGAATTTCTAAAGGATCACGGCTATGA
AGTGACCCATATTTCCGACGGAAAAATTGCACTTGAAACATTTCGAGAAGAATCATTTGATTTGATTGTATTGGACATTA
TGATTCCGTCCATGACAGGATTGGAAGTCCTACAGGAGATTCGTAAGACATCAAAAATTCCAATTCTTATGTTAACGGCA
ATGGATGACGAATACACACAATTGGTTAGCTTCAATCAACTGATTAGTGACTACGTTGTAAAACCTTTTTCGCCGATTAT
TCTTGTGAAACGCATTGAAAATATTTTGCGTGGTGAAGGTGATATTATAGAAGCGGCCGACATTCAAATCCATCCGTCCA
GTGGAGCGGTTTATATGGCAGAAGAAGAAGTACAATTAACGAAAAAAGAATACGAGATTTTACTGTACTTGGCAAAACGC
CGTGGAAAAATTGTCAATCGTGATCATCTAATGCTGGGAATTTGGGGCTATACAGAACTGGATAGCCGAGTTTTGGACAA
TCATATCAAGAATCTACGTAAGAAGTTACCATCTCTTCCTTTACGAACGGTAATTGGTCGAGGTTATCAGGTTGAGGAAT
TCTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-112)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(142-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

38.739

100

0.402
  micA Streptococcus pneumoniae Cp1015

37.281

100

0.397
  vicR Streptococcus mutans UA159

35.47

100

0.388