Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   I6J04_RS10935 Genome accession   NZ_CP068079
Coordinates   2233073..2233702 (+) Length   209 a.a.
NCBI ID   WP_046100412.1    Uniprot ID   A0AAJ0JNV1
Organism   Staphylococcus carnosus strain FDAARGOS_1147     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2228073..2238702
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J04_RS10910 (I6J04_10910) - 2228792..2229778 (-) 987 WP_046100410.1 FUSC family protein -
  I6J04_RS10915 (I6J04_10915) map 2230030..2230797 (+) 768 WP_015900707.1 type I methionyl aminopeptidase -
  I6J04_RS10920 (I6J04_10920) - 2230931..2231326 (+) 396 WP_015900706.1 hypothetical protein -
  I6J04_RS10925 (I6J04_10925) liaF 2231342..2232043 (+) 702 WP_046100411.1 cell wall-active antibiotics response protein LiaF -
  I6J04_RS10930 (I6J04_10930) vraS 2232040..2233083 (+) 1044 WP_015900704.1 sensor histidine kinase Regulator
  I6J04_RS10935 (I6J04_10935) vraR 2233073..2233702 (+) 630 WP_046100412.1 response regulator transcription factor Regulator
  I6J04_RS10940 (I6J04_10940) - 2233752..2234330 (-) 579 WP_015900702.1 beta-class carbonic anhydrase -
  I6J04_RS10945 (I6J04_10945) - 2234540..2235616 (-) 1077 WP_046100413.1 YihY/virulence factor BrkB family protein -
  I6J04_RS10950 (I6J04_10950) - 2235735..2236031 (-) 297 WP_015900700.1 hypothetical protein -
  I6J04_RS10955 (I6J04_10955) - 2236039..2236503 (-) 465 WP_046100414.1 low molecular weight protein-tyrosine-phosphatase -
  I6J04_RS10960 (I6J04_10960) - 2236739..2236945 (+) 207 WP_015900698.1 DUF1128 family protein -
  I6J04_RS10965 (I6J04_10965) - 2236984..2238222 (+) 1239 WP_015900697.1 aminopeptidase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 23703.18 Da        Isoelectric Point: 4.7025

>NTDB_id=526979 I6J04_RS10935 WP_046100412.1 2233073..2233702(+) (vraR) [Staphylococcus carnosus strain FDAARGOS_1147]
MTIKVLFVDDHEMVRIGISSYLSTQPDIEVVGEGKSGKEAIEKAHELHPDLILLDLLMEDMDGVEATQQIKKDLPNIKVL
MLTSYIEDNEVYRALDAGVDSYILKTTSASDIAEAIRKTQHNESVFEAEVLVKMRNRMNQRAELYEMLTDREMEILLLIA
KGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHDLIQ

Nucleotide


Download         Length: 630 bp        

>NTDB_id=526979 I6J04_RS10935 WP_046100412.1 2233073..2233702(+) (vraR) [Staphylococcus carnosus strain FDAARGOS_1147]
ATGACGATTAAAGTGCTATTTGTTGATGACCATGAAATGGTGCGTATCGGCATTTCAAGTTATTTATCAACACAACCAGA
TATTGAAGTAGTAGGGGAAGGTAAATCTGGTAAAGAAGCTATTGAAAAAGCACATGAACTACATCCTGATTTAATTTTGC
TGGATTTATTGATGGAGGATATGGATGGTGTTGAAGCAACACAGCAAATCAAAAAAGATTTACCGAATATTAAAGTGTTG
ATGTTAACAAGTTACATTGAAGATAACGAAGTATATCGTGCATTAGATGCAGGGGTAGACAGTTATATCCTTAAAACAAC
CAGTGCAAGCGACATTGCAGAGGCAATCAGAAAAACACAACATAATGAATCTGTATTTGAAGCGGAAGTACTCGTTAAAA
TGCGTAATCGCATGAATCAACGTGCGGAATTATATGAAATGCTAACAGATAGAGAAATGGAAATTCTTTTATTAATTGCA
AAAGGATATTCTAACCAAGAAATTGCAAGTGCATCACACATAACTATTAAAACAGTAAAAACGCATGTAAGTAATATATT
AAGTAAATTAGAAGTACAAGATAGAACACAAGCTGTGATATATGCATTCCAACATGATTTGATTCAATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-117)

Bacterial regulatory proteins, luxR family (GerE)

(147-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

90.431

100

0.904
  degU Bacillus subtilis subsp. subtilis str. 168

34.821

100

0.373