Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   I6J04_RS01740 Genome accession   NZ_CP068079
Coordinates   361844..362290 (-) Length   148 a.a.
NCBI ID   WP_046100579.1    Uniprot ID   A0AAJ0JNB3
Organism   Staphylococcus carnosus strain FDAARGOS_1147     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 329421..376585 361844..362290 within 0


Gene organization within MGE regions


Location: 329421..376585
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J04_RS01520 (I6J04_01520) - 329421..331154 (-) 1734 WP_046099490.1 N-acetylmuramoyl-L-alanine amidase family protein -
  I6J04_RS01525 (I6J04_01525) - 331154..331459 (-) 306 WP_046099491.1 holin -
  I6J04_RS01530 (I6J04_01530) - 331512..331820 (-) 309 WP_152648950.1 hypothetical protein -
  I6J04_RS01535 (I6J04_01535) - 331860..332003 (-) 144 WP_082080547.1 XkdX family protein -
  I6J04_RS01540 (I6J04_01540) - 331987..332343 (-) 357 WP_046099493.1 hypothetical protein -
  I6J04_RS01545 (I6J04_01545) - 332357..333838 (-) 1482 WP_052719429.1 BppU family phage baseplate upper protein -
  I6J04_RS01550 (I6J04_01550) - 333850..336465 (-) 2616 WP_046099494.1 peptidase G2 autoproteolytic cleavage domain-containing protein -
  I6J04_RS01555 (I6J04_01555) - 336483..337013 (-) 531 WP_046099495.1 hypothetical protein -
  I6J04_RS01560 (I6J04_01560) - 337006..338568 (-) 1563 WP_046099496.1 prophage endopeptidase tail family protein -
  I6J04_RS01565 (I6J04_01565) - 338577..339434 (-) 858 WP_046099497.1 phage tail domain-containing protein -
  I6J04_RS01570 (I6J04_01570) - 339452..344539 (-) 5088 WP_046099498.1 phage tail tape measure protein -
  I6J04_RS01575 (I6J04_01575) gpGT 344681..345202 (-) 522 WP_046099499.1 phage tail assembly chaperone GT -
  I6J04_RS01580 (I6J04_01580) gpG 345218..345577 (-) 360 WP_046099500.1 phage tail assembly chaperone G -
  I6J04_RS01585 (I6J04_01585) - 345647..345844 (-) 198 WP_046099501.1 hypothetical protein -
  I6J04_RS01590 (I6J04_01590) - 345863..346462 (-) 600 WP_414075498.1 major tail protein -
  I6J04_RS01595 (I6J04_01595) - 346459..346866 (-) 408 WP_152648951.1 hypothetical protein -
  I6J04_RS01600 (I6J04_01600) - 346887..347276 (-) 390 WP_046099504.1 hypothetical protein -
  I6J04_RS01605 (I6J04_01605) - 347266..347634 (-) 369 WP_052719430.1 hypothetical protein -
  I6J04_RS01610 (I6J04_01610) - 347618..347905 (-) 288 WP_046099505.1 phage head-tail connector protein -
  I6J04_RS01615 (I6J04_01615) - 347920..349113 (-) 1194 WP_201638508.1 phage major capsid protein -
  I6J04_RS01620 (I6J04_01620) - 349124..349831 (-) 708 WP_046099507.1 head maturation protease, ClpP-related -
  I6J04_RS01625 (I6J04_01625) - 349794..350972 (-) 1179 WP_046099508.1 phage portal protein -
  I6J04_RS01630 (I6J04_01630) - 350988..352658 (-) 1671 WP_046099509.1 terminase TerL endonuclease subunit -
  I6J04_RS01635 (I6J04_01635) - 352655..353017 (-) 363 WP_235318550.1 hypothetical protein -
  I6J04_RS01640 (I6J04_01640) - 353191..353505 (-) 315 WP_046099510.1 HNH endonuclease -
  I6J04_RS01645 (I6J04_01645) - 353784..354179 (-) 396 WP_046099511.1 phage protein -
  I6J04_RS01650 (I6J04_01650) - 354193..354468 (-) 276 WP_046099512.1 hypothetical protein -
  I6J04_RS01655 (I6J04_01655) - 354484..354711 (-) 228 WP_046099513.1 DUF1514 family protein -
  I6J04_RS01660 (I6J04_01660) rinB 354711..354845 (-) 135 WP_152648952.1 transcriptional activator RinB -
  I6J04_RS01665 (I6J04_01665) - 354842..355033 (-) 192 WP_046099514.1 hypothetical protein -
  I6J04_RS01670 (I6J04_01670) - 355036..355197 (-) 162 WP_156768892.1 hypothetical protein -
  I6J04_RS01675 (I6J04_01675) - 355197..355646 (-) 450 WP_046099515.1 hypothetical protein -
  I6J04_RS01680 (I6J04_01680) - 355833..356150 (-) 318 WP_046099516.1 hypothetical protein -
  I6J04_RS01685 (I6J04_01685) - 356229..356729 (-) 501 WP_046099517.1 dUTP diphosphatase -
  I6J04_RS01690 (I6J04_01690) - 356788..357540 (-) 753 WP_082080549.1 nucleoside 2-deoxyribosyltransferase -
  I6J04_RS01695 (I6J04_01695) - 357533..357982 (-) 450 WP_052719496.1 DUF3310 domain-containing protein -
  I6J04_RS01700 (I6J04_01700) - 357983..358513 (-) 531 WP_015899740.1 hypothetical protein -
  I6J04_RS01705 (I6J04_01705) - 358519..358695 (-) 177 WP_156768906.1 hypothetical protein -
  I6J04_RS01710 (I6J04_01710) - 358692..359099 (-) 408 WP_046100673.1 RusA family crossover junction endodeoxyribonuclease -
  I6J04_RS01715 (I6J04_01715) - 359083..359265 (-) 183 WP_046100672.1 hypothetical protein -
  I6J04_RS01720 (I6J04_01720) - 359265..360050 (-) 786 WP_046100671.1 ATP-binding protein -
  I6J04_RS01725 (I6J04_01725) - 360051..360821 (-) 771 WP_046100582.1 conserved phage C-terminal domain-containing protein -
  I6J04_RS01730 (I6J04_01730) - 360814..361161 (-) 348 WP_200894321.1 hypothetical protein -
  I6J04_RS01735 (I6J04_01735) - 361154..361831 (-) 678 WP_046100580.1 putative HNHc nuclease -
  I6J04_RS01740 (I6J04_01740) ssbA 361844..362290 (-) 447 WP_046100579.1 single-stranded DNA-binding protein Machinery gene
  I6J04_RS01745 (I6J04_01745) - 362287..362925 (-) 639 WP_046100578.1 ERF family protein -
  I6J04_RS01750 (I6J04_01750) - 362882..363142 (-) 261 WP_015899731.1 DUF2483 family protein -
  I6J04_RS01755 (I6J04_01755) - 363135..363380 (-) 246 WP_046100577.1 hypothetical protein -
  I6J04_RS01760 (I6J04_01760) - 363438..363620 (-) 183 WP_046100576.1 hypothetical protein -
  I6J04_RS01765 (I6J04_01765) - 363617..363847 (-) 231 WP_046100575.1 DUF771 domain-containing protein -
  I6J04_RS01770 (I6J04_01770) - 363907..364113 (+) 207 WP_046100574.1 hypothetical protein -
  I6J04_RS01775 (I6J04_01775) - 364520..364720 (-) 201 WP_046100573.1 hypothetical protein -
  I6J04_RS01780 (I6J04_01780) tscA 364732..364941 (-) 210 WP_046100572.1 type II toxin-antitoxin system antitoxin TscA -
  I6J04_RS01785 (I6J04_01785) - 364975..365415 (-) 441 WP_052719490.1 ORF6C domain-containing protein -
  I6J04_RS01790 (I6J04_01790) - 365524..366465 (-) 942 WP_046100570.1 DUF3102 domain-containing protein -
  I6J04_RS01795 (I6J04_01795) - 366479..366733 (-) 255 WP_046100569.1 helix-turn-helix transcriptional regulator -
  I6J04_RS01800 (I6J04_01800) - 366926..367564 (+) 639 WP_046100568.1 XRE family transcriptional regulator -
  I6J04_RS01805 (I6J04_01805) - 367618..368298 (+) 681 WP_046100567.1 VanZ family protein -
  I6J04_RS01810 (I6J04_01810) - 368356..369384 (+) 1029 WP_046100566.1 tyrosine-type recombinase/integrase -
  I6J04_RS13380 - 369700..370053 (-) 354 WP_052719489.1 HIRAN domain-containing protein -
  I6J04_RS13385 - 370038..370640 (-) 603 WP_052719488.1 hypothetical protein -
  I6J04_RS01820 (I6J04_01820) - 370688..371161 (-) 474 WP_052719487.1 hypothetical protein -
  I6J04_RS13390 - 371178..371678 (-) 501 WP_235318616.1 hypothetical protein -
  I6J04_RS01830 (I6J04_01830) - 372266..372838 (-) 573 WP_052719486.1 hypothetical protein -
  I6J04_RS01835 (I6J04_01835) - 373023..373517 (+) 495 WP_046100565.1 hypothetical protein -
  I6J04_RS01840 (I6J04_01840) - 373646..374029 (+) 384 WP_046100564.1 hypothetical protein -
  I6J04_RS01845 (I6J04_01845) - 374126..374572 (-) 447 WP_015900029.1 GNAT family N-acetyltransferase -
  I6J04_RS01850 (I6J04_01850) - 374743..375195 (-) 453 Protein_369 VOC family protein -
  I6J04_RS01855 (I6J04_01855) - 375306..375683 (+) 378 WP_046100563.1 VOC family protein -
  I6J04_RS01860 (I6J04_01860) - 375842..376021 (+) 180 WP_046100562.1 hypothetical protein -
  I6J04_RS01865 (I6J04_01865) - 376076..376585 (-) 510 WP_046100561.1 YfcE family phosphodiesterase -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 16713.43 Da        Isoelectric Point: 4.9115

>NTDB_id=526959 I6J04_RS01740 WP_046100579.1 361844..362290(-) (ssbA) [Staphylococcus carnosus strain FDAARGOS_1147]
MINRVVLVGRLTKDPEFRTTPSGIDVATFTLAVNRNFKSKNGEQQADFINCVVFRKQAENVNNYLNKGSLAGVDGLLQSR
SYENKEGQRVFVTEVVCDSVQFLEPKNTQSSNNNQSNNQVQQREKALQSDNPFNNSNNFDMDTDDLPF

Nucleotide


Download         Length: 447 bp        

>NTDB_id=526959 I6J04_RS01740 WP_046100579.1 361844..362290(-) (ssbA) [Staphylococcus carnosus strain FDAARGOS_1147]
ATGATTAACAGAGTCGTATTAGTAGGTCGCTTAACAAAAGACCCAGAATTCAGAACAACGCCAAGCGGTATAGACGTAGC
AACATTCACACTAGCAGTCAACCGTAATTTTAAAAGTAAAAATGGAGAGCAACAGGCGGACTTTATCAACTGCGTCGTAT
TCCGTAAACAAGCAGAAAACGTCAATAACTATTTGAATAAAGGAAGTTTAGCAGGTGTCGATGGTCTCTTACAATCACGA
AGCTATGAGAATAAGGAAGGACAAAGAGTATTTGTTACGGAAGTCGTATGTGACAGTGTGCAATTCCTAGAACCTAAGAA
TACACAATCCTCAAATAATAACCAATCAAATAACCAAGTGCAGCAAAGAGAGAAGGCGCTTCAAAGCGACAATCCATTCA
ATAATAGTAACAACTTTGATATGGATACGGATGATTTACCTTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.977

100

0.662
  ssb Latilactobacillus sakei subsp. sakei 23K

51.176

100

0.588
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

71.622

0.419
  ssbB Streptococcus sobrinus strain NIDR 6715-7

39.865

100

0.399
  ssbA Streptococcus mutans UA159

39.865

100

0.399
  ssbB/cilA Streptococcus mitis NCTC 12261

37.162

100

0.372
  ssbB/cilA Streptococcus pneumoniae TIGR4

37.162

100

0.372
  ssbB/cilA Streptococcus pneumoniae Rx1

36.486

100

0.365
  ssbB/cilA Streptococcus pneumoniae D39

36.486

100

0.365
  ssbB/cilA Streptococcus pneumoniae R6

36.486

100

0.365
  ssbB/cilA Streptococcus mitis SK321

36.486

100

0.365