Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   I6J10_RS11170 Genome accession   NZ_CP068061
Coordinates   2256255..2256785 (+) Length   176 a.a.
NCBI ID   WP_016912339.1    Uniprot ID   -
Organism   Mammaliicoccus vitulinus strain FDAARGOS_1153     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 2257164..2258305 2256255..2256785 flank 379


Gene organization within MGE regions


Location: 2256255..2258305
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J10_RS11170 (I6J10_11175) ssbA 2256255..2256785 (+) 531 WP_016912339.1 single-stranded DNA-binding protein Machinery gene
  I6J10_RS11175 (I6J10_11180) rpsR 2256843..2257085 (+) 243 WP_016912338.1 30S ribosomal protein S18 -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19597.19 Da        Isoelectric Point: 4.7512

>NTDB_id=526856 I6J10_RS11170 WP_016912339.1 2256255..2256785(+) (ssbA) [Mammaliicoccus vitulinus strain FDAARGOS_1153]
MINRVVLVGRLTKDPEYRVTPSGVQVATFTLAINRTFTNSQGEREADFINCVVFRRPAENVNNYLSKGSLAGVEGRLQSR
SYENQEGRRVYVTEVVCDSVQFLEPKGANQRQSGNDNQSNNQNNNEFQNYGQDFGGNQQQGQKAPSNQQSNNNQQSSNPF
ANANGPIDISDDDLPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=526856 I6J10_RS11170 WP_016912339.1 2256255..2256785(+) (ssbA) [Mammaliicoccus vitulinus strain FDAARGOS_1153]
ATGATTAATCGTGTTGTATTAGTCGGTCGGTTAACTAAAGATCCGGAATACAGAGTAACACCCTCAGGCGTTCAAGTTGC
TACTTTCACCTTAGCTATCAATCGTACTTTTACGAATTCGCAAGGTGAAAGAGAAGCTGACTTTATCAACTGTGTTGTAT
TTAGACGCCCCGCAGAGAATGTAAACAATTACTTATCTAAAGGTAGTCTTGCAGGTGTTGAAGGTCGTCTACAATCTCGT
AGCTACGAGAACCAAGAAGGTCGTCGTGTTTATGTAACTGAAGTTGTTTGTGACAGTGTTCAATTCCTTGAACCTAAAGG
CGCAAATCAACGTCAATCTGGTAATGATAACCAATCAAATAACCAAAATAATAACGAGTTCCAGAATTATGGACAAGACT
TTGGCGGTAATCAGCAACAAGGACAAAAAGCACCTTCAAATCAACAGTCAAATAATAATCAACAATCAAGTAACCCATTT
GCGAATGCTAATGGACCAATTGATATCAGTGATGATGATTTGCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

62.57

100

0.636
  ssb Latilactobacillus sakei subsp. sakei 23K

53.889

100

0.551
  ssb Glaesserella parasuis strain SC1401

33.166

100

0.375