Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I6J12_RS11000 Genome accession   NZ_CP068060
Coordinates   2257221..2257730 (+) Length   169 a.a.
NCBI ID   WP_003038232.1    Uniprot ID   I0S8Y6
Organism   Streptococcus anginosus strain FDAARGOS_1155     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2252221..2262730
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J12_RS10955 (I6J12_10955) - 2252454..2253188 (-) 735 WP_003038240.1 helix-turn-helix domain-containing protein -
  I6J12_RS10960 (I6J12_10960) - 2253345..2253548 (+) 204 WP_003038241.1 helix-turn-helix transcriptional regulator -
  I6J12_RS10965 (I6J12_10965) - 2253684..2253830 (+) 147 WP_003038244.1 BOW99_gp33 family protein -
  I6J12_RS10970 (I6J12_10970) - 2253870..2254202 (+) 333 WP_003038177.1 hypothetical protein -
  I6J12_RS10975 (I6J12_10975) - 2254427..2255119 (+) 693 WP_003038151.1 ERF family protein -
  I6J12_RS10980 (I6J12_10980) - 2255143..2255463 (+) 321 WP_003038223.1 hypothetical protein -
  I6J12_RS10985 (I6J12_10985) - 2255460..2256497 (+) 1038 WP_003038211.1 DUF1351 domain-containing protein -
  I6J12_RS10990 (I6J12_10990) - 2256484..2257032 (+) 549 WP_003038155.1 MazG-like family protein -
  I6J12_RS10995 (I6J12_10995) - 2257022..2257231 (+) 210 WP_003038202.1 hypothetical protein -
  I6J12_RS11000 (I6J12_11000) ssb 2257221..2257730 (+) 510 WP_003038232.1 single-stranded DNA-binding protein Machinery gene
  I6J12_RS11005 (I6J12_11005) - 2257739..2257966 (+) 228 WP_042752937.1 hypothetical protein -
  I6J12_RS11010 (I6J12_11010) - 2257967..2258146 (+) 180 WP_003038226.1 hypothetical protein -
  I6J12_RS11015 (I6J12_11015) - 2258174..2258377 (+) 204 WP_003038173.1 hypothetical protein -
  I6J12_RS11020 (I6J12_11020) - 2258374..2258796 (+) 423 WP_003038236.1 helix-turn-helix domain-containing protein -
  I6J12_RS11025 (I6J12_11025) - 2258810..2259241 (+) 432 WP_003038188.1 hypothetical protein -
  I6J12_RS11030 (I6J12_11030) - 2259243..2259980 (+) 738 WP_003038182.1 hypothetical protein -
  I6J12_RS11035 (I6J12_11035) - 2259994..2260350 (+) 357 WP_003038208.1 DUF1372 family protein -
  I6J12_RS11040 (I6J12_11040) - 2260371..2260649 (+) 279 WP_003038220.1 DUF3310 domain-containing protein -
  I6J12_RS11045 (I6J12_11045) - 2260639..2261061 (+) 423 WP_003038171.1 hypothetical protein -
  I6J12_RS11480 - 2261042..2261392 (+) 351 WP_003038200.1 DUF1642 domain-containing protein -
  I6J12_RS11055 (I6J12_11055) - 2261385..2261858 (+) 474 WP_003038233.1 DUF1642 domain-containing protein -
  I6J12_RS11060 (I6J12_11060) - 2261859..2262083 (+) 225 WP_003038190.1 hypothetical protein -
  I6J12_RS11065 (I6J12_11065) - 2262070..2262438 (+) 369 WP_003038196.1 hypothetical protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18644.28 Da        Isoelectric Point: 4.5386

>NTDB_id=526828 I6J12_RS11000 WP_003038232.1 2257221..2257730(+) (ssb) [Streptococcus anginosus strain FDAARGOS_1155]
MINNVVLVGRMTRDAELRYTNSNIAVATFTLAVNRPFKNEAGEREADFINAVIWRQQAENLANWAKKGSLIGITGSIQTR
NYENQQGQRVYVTEVVASNFQLLESRNSQQSNQGQGDYQQNQGNFGNKGQQGSFFEGNTTNPAPGYTNDNGPFGGSSNPL
DISDDDLPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=526828 I6J12_RS11000 WP_003038232.1 2257221..2257730(+) (ssb) [Streptococcus anginosus strain FDAARGOS_1155]
ATGATAAATAACGTTGTGCTAGTCGGTAGAATGACAAGAGATGCAGAGCTTAGGTATACCAATTCAAATATAGCTGTTGC
TACATTTACTCTTGCTGTTAACCGACCATTTAAGAATGAAGCAGGTGAACGTGAAGCGGATTTTATTAATGCTGTCATTT
GGCGTCAACAAGCAGAGAATCTTGCTAATTGGGCTAAAAAAGGCTCGCTGATCGGGATCACTGGATCTATCCAGACTAGG
AATTACGAAAATCAGCAAGGGCAGCGCGTCTATGTCACAGAAGTAGTTGCAAGTAATTTCCAATTGCTAGAAAGTCGCAA
CAGTCAGCAATCCAACCAAGGTCAAGGTGATTACCAACAAAACCAAGGCAATTTCGGAAATAAGGGCCAGCAGGGTAGCT
TTTTTGAGGGGAATACAACAAATCCAGCTCCAGGCTATACTAATGACAACGGGCCATTTGGCGGGTCGTCAAATCCATTA
GATATCAGTGATGATGATTTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I0S8Y6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

59.412

100

0.598
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.172

100

0.568