Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   I6J14_RS09545 Genome accession   NZ_CP068057
Coordinates   1901685..1902176 (+) Length   163 a.a.
NCBI ID   WP_003052678.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain FDAARGOS_1157     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1870739..1900827 1901685..1902176 flank 858


Gene organization within MGE regions


Location: 1870739..1902176
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J14_RS09405 (I6J14_09405) - 1870739..1871113 (-) 375 WP_003052743.1 helix-turn-helix transcriptional regulator -
  I6J14_RS09410 (I6J14_09410) - 1871281..1871502 (+) 222 WP_003052740.1 helix-turn-helix transcriptional regulator -
  I6J14_RS09415 (I6J14_09415) - 1871665..1872057 (+) 393 WP_003052737.1 pyridoxamine 5'-phosphate oxidase family protein -
  I6J14_RS09420 (I6J14_09420) - 1872149..1873281 (-) 1133 Protein_1818 IS3 family transposase -
  I6J14_RS09425 (I6J14_09425) - 1873385..1875667 (-) 2283 WP_003052727.1 Xaa-Pro dipeptidyl-peptidase -
  I6J14_RS09430 (I6J14_09430) gla 1875794..1876642 (+) 849 WP_003052725.1 aquaglyceroporin Gla -
  I6J14_RS09435 (I6J14_09435) - 1876745..1877650 (-) 906 WP_003052723.1 sulfite exporter TauE/SafE family protein -
  I6J14_RS09445 (I6J14_09445) - 1879346..1880098 (+) 753 WP_115276468.1 CppA N-terminal domain-containing protein -
  I6J14_RS09450 (I6J14_09450) - 1880095..1881018 (+) 924 WP_115253130.1 serine hydrolase domain-containing protein -
  I6J14_RS09455 (I6J14_09455) - 1881287..1882225 (+) 939 Protein_1825 IS30 family transposase -
  I6J14_RS09460 (I6J14_09460) - 1882402..1882845 (-) 444 WP_115253267.1 GNAT family N-acetyltransferase -
  I6J14_RS09465 (I6J14_09465) pflB 1882949..1885276 (-) 2328 WP_003052713.1 formate C-acetyltransferase -
  I6J14_RS09470 (I6J14_09470) dinB 1885485..1886582 (+) 1098 WP_003052709.1 DNA polymerase IV -
  I6J14_RS09475 (I6J14_09475) - 1886671..1887159 (-) 489 WP_037585028.1 hypothetical protein -
  I6J14_RS09480 (I6J14_09480) - 1887232..1889706 (-) 2475 WP_115276467.1 ATP-dependent RecD-like DNA helicase -
  I6J14_RS09485 (I6J14_09485) lepB 1889766..1890359 (-) 594 WP_003052704.1 signal peptidase I -
  I6J14_RS09490 (I6J14_09490) rnhC 1890371..1891279 (-) 909 WP_115253128.1 ribonuclease HIII -
  I6J14_RS09495 (I6J14_09495) - 1891436..1891744 (+) 309 WP_003052702.1 hypothetical protein -
  I6J14_RS09500 (I6J14_09500) - 1891747..1892292 (+) 546 WP_115253127.1 CvpA family protein -
  I6J14_RS09505 (I6J14_09505) - 1892448..1894784 (+) 2337 WP_115253126.1 endonuclease MutS2 -
  I6J14_RS09510 (I6J14_09510) - 1894876..1896195 (-) 1320 WP_115253125.1 FAD-containing oxidoreductase -
  I6J14_RS09515 (I6J14_09515) trxA 1896422..1896736 (+) 315 WP_003052691.1 thioredoxin -
  I6J14_RS09520 (I6J14_09520) - 1896828..1898176 (+) 1349 WP_115276319.1 IS3 family transposase -
  I6J14_RS09525 (I6J14_09525) mutY 1898224..1899390 (-) 1167 WP_115245695.1 A/G-specific adenine glycosylase -
  I6J14_RS09530 (I6J14_09530) - 1899557..1899850 (+) 294 WP_003052683.1 hypothetical protein -
  I6J14_RS09535 (I6J14_09535) - 1900507..1900827 (+) 321 WP_142758264.1 hypothetical protein -
  I6J14_RS09540 (I6J14_09540) rpsF 1901373..1901663 (+) 291 WP_002983117.1 30S ribosomal protein S6 -
  I6J14_RS09545 (I6J14_09545) ssbA 1901685..1902176 (+) 492 WP_003052678.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 17968.76 Da        Isoelectric Point: 4.8894

>NTDB_id=526756 I6J14_RS09545 WP_003052678.1 1901685..1902176(+) (ssbA) [Streptococcus dysgalactiae strain FDAARGOS_1157]
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRTFKSQSGEREADFINCVIWRQPAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREGGSTGSFNGGFNNNTSSSNSYSAPAQQTPNFGRDDSPFGNSNPMDISDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=526756 I6J14_RS09545 WP_003052678.1 1901685..1902176(+) (ssbA) [Streptococcus dysgalactiae strain FDAARGOS_1157]
ATGATTAATAATGTAGTACTAGTTGGTCGCATGACCAAGGATGCAGAACTTCGTTACACACCAAGTCAAGTAGCTGTGGC
TACCTTCACACTTGCTGTTAACCGTACCTTTAAAAGCCAAAGTGGTGAGCGCGAGGCAGATTTCATTAACTGTGTGATCT
GGCGCCAACCTGCTGAAAATTTAGCAAACTGGGCTAAAAAAGGTGCCTTGATTGGAATTACGGGTCGTATTCAGACACGT
AACTACGAAAACCAACAAGGACAACGTGTCTATGTAACAGAAGTTGTTGCAGATAATTTCCAAATGTTGGAAAGCCGTGC
TACACGTGAAGGTGGCTCAACTGGCTCATTTAATGGTGGATTTAACAATAACACTTCATCATCGAACAGTTACTCAGCGC
CTGCACAACAAACACCTAACTTTGGAAGAGATGATAGCCCATTTGGCAATTCAAACCCGATGGATATCTCAGATGACGAT
CTTCCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

59.195

100

0.632
  ssb Latilactobacillus sakei subsp. sakei 23K

58.721

100

0.62
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.547

65.031

0.374