Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   I6J14_RS04980 Genome accession   NZ_CP068057
Coordinates   1024539..1025348 (-) Length   269 a.a.
NCBI ID   WP_115252716.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain FDAARGOS_1157     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1019539..1030348
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J14_RS04965 (I6J14_04965) - 1019576..1019860 (-) 285 WP_160147947.1 YSIRK-type signal peptide-containing protein -
  I6J14_RS04970 (I6J14_04970) smc 1020202..1023747 (-) 3546 WP_115252717.1 chromosome segregation protein SMC -
  I6J14_RS04975 (I6J14_04975) rnc 1023748..1024440 (-) 693 WP_003049954.1 ribonuclease III -
  I6J14_RS04980 (I6J14_04980) vicX 1024539..1025348 (-) 810 WP_115252716.1 MBL fold metallo-hydrolase Regulator
  I6J14_RS04985 (I6J14_04985) vicK 1025352..1026704 (-) 1353 WP_003049953.1 cell wall metabolism sensor histidine kinase VicK Regulator
  I6J14_RS04990 (I6J14_04990) vicR 1026697..1027407 (-) 711 WP_003049952.1 response regulator YycF Regulator
  I6J14_RS04995 (I6J14_04995) - 1027665..1028459 (+) 795 WP_003049951.1 amino acid ABC transporter ATP-binding protein -
  I6J14_RS05000 (I6J14_05000) - 1028459..1029259 (+) 801 WP_003049950.1 transporter substrate-binding domain-containing protein -
  I6J14_RS05005 (I6J14_05005) - 1029273..1029974 (+) 702 WP_003049949.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 30143.42 Da        Isoelectric Point: 6.0739

>NTDB_id=526720 I6J14_RS04980 WP_115252716.1 1024539..1025348(-) (vicX) [Streptococcus dysgalactiae strain FDAARGOS_1157]
MIESGFKYSILASGSTGNCFYLETPKKRLLIDAGLTGKKIASLLAEIDRKPEDLDAILITHEHSDHIKGVGVMARKYHLD
VYANEKTWQLMDERNMLGKLDASQKHVFQRDKMLTFGDVDIESFGVSHDAVDPQFYRIMKDNKSFVMLTDTGYVSDRMTG
IIENADGYLIESNHDIEILRSGSYPWSLKQRILSDMGHLSNEDGAGAMIRSLGHKTKKIYLGHLSKENNIKELAHMTMVN
QLAMADLAVGTDFTVHDTSPDMACPLTDI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=526720 I6J14_RS04980 WP_115252716.1 1024539..1025348(-) (vicX) [Streptococcus dysgalactiae strain FDAARGOS_1157]
ATGATTGAAAGTGGTTTTAAATACAGTATTTTAGCATCCGGATCCACAGGCAATTGTTTTTATTTAGAAACACCTAAAAA
GCGATTATTAATTGACGCGGGGTTGACTGGTAAGAAAATCGCCAGTCTCCTTGCTGAAATTGACCGCAAGCCTGAAGATT
TAGATGCTATTTTGATTACACATGAACATTCAGATCATATCAAGGGAGTGGGAGTGATGGCTCGCAAGTATCATTTGGAT
GTTTATGCCAACGAAAAAACATGGCAGTTGATGGATGAGCGTAATATGCTCGGGAAGCTTGATGCCTCCCAAAAACATGT
TTTCCAAAGAGATAAAATGTTGACCTTCGGAGATGTTGACATTGAAAGTTTTGGGGTTAGTCATGACGCGGTTGATCCTC
AGTTTTACCGCATCATGAAGGACAACAAATCGTTTGTGATGCTGACTGATACAGGCTATGTTAGTGACCGAATGACAGGT
ATTATTGAAAATGCGGATGGCTACCTGATTGAATCCAATCATGACATTGAAATTTTACGCTCGGGTTCTTACCCTTGGAG
TTTAAAACAACGCATTTTATCTGACATGGGACATTTGTCAAATGAAGATGGCGCTGGAGCTATGATTAGAAGTTTAGGGC
ATAAGACCAAAAAAATCTATTTGGGTCATTTGAGTAAAGAAAATAACATCAAAGAGTTGGCTCACATGACCATGGTGAAC
CAATTAGCCATGGCAGATTTAGCAGTAGGTACAGACTTTACTGTTCATGATACTTCCCCGGATATGGCCTGCCCCTTGAC
GGATATTTAA

Domains

Predicted by InterproScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(28-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

75.836

100

0.758